SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5381

Length: 1449 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene5381 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15339	53/53

Source	Descriptions	Term	Type	Identity
AutoFact	Otubain-like cysteine protease n=2 Tax=Pinaceae RepID=A5YBN2_PINRA	-	-	92%
FL-Next	tr=Otubain-like cysteine protease; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	98%
Blast2go	ubiquitin thioesterase otubain-like protein	-	-	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ovarian tumour, otubain	IPR003323	-	0.0	-
Sma3	Ubiquitin thioesterase Otubain	IPR016615	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A5YBN2

Fln msg: your sequence is longer than subject: 338 - 294

Fln protein: MATTPFHGERKLGDPAQQFKHKQTKNRKTLEALPFVHCIYSEKMDGSCDGGDGVVDADWTCYKDDDIIQQQNAIQAEEALKIPFVGDKESLSALAAEYETGSSILKAKIEVLDELYGAIRRTRGDGNCFFRSFMFSYLEHILETHDEAEVEHVLKNIEQCKKALLDLGYAEFTFEDFFSIFIDLLESVIPGRESSISIDTLIERIRDPLVSNYVVMFFRFVTSGEIRRRTEFFGPFIMGVSNGTVDQFCKTSVEPMGEESDHVHITALSDALGVPIRVVYLDRSSCDVGKTEVNHHDFIPSNCLLKEAGSETIEPYVVLLYRPGHYDILYPRSKSGV*

Protein Length: 339

Fln nts: ATGGGATGGCAGGCCGTCCATTTCAAAAAATAAAGAATAATATTCCCAAAAAAGAGTGCTATATAA_-_ATGGCCACCACTCCCTTTCATGGGGAGAGGAAACTTGGAGATCCAGCACAGCAGTTTAAGCATAAGCAGACGAAGAACAGGAAAACCCTCGAAGCCCTACCCTTCGTCCATTGCATTTACTCTGAAAAAATGGATGGCAGTTGCGATGGAGGTGATGGCGTAGTTGACGCGGACTGGACATGCTACAAGGACGACGACATTATACAGCAACAGAATGCCATCCAGGCCGAGGAAGCCCTCAAAATCCCATTTGTCGGCGACAAGGAGTCTCTTTCTGCCTTGGCAGCTGAGTATGAAACAGGGAGTTCAATCTTAAAGGCAAAAATTGAGGTGCTGGATGAGTTATATGGGGCAATTCGACGCACACGTGGTGATGGAAACTGCTTCTTTCGTTCCTTCATGTTTTCATATCTGGAGCATATATTGGAGACCCATGATGAAGCAGAAGTGGAACATGTGTTGAAAAACATTGAGCAGTGCAAGAAAGCCCTCCTGGACCTGGGATACGCAGAGTTCACTTTTGAAGACTTCTTCTCTATATTTATTGATCTGCTCGAGAGTGTGATTCCAGGCAGGGAGTCATCTATAAGTATTGATACACTCATCGAGAGGATCCGAGACCCATTAGTCTCAAATTATGTTGTGATGTTTTTCAGATTTGTGACATCGGGTGAAATTCGTCGGAGGACAGAGTTTTTTGGACCTTTCATAATGGGTGTAAGCAATGGGACAGTGGACCAGTTCTGCAAAACATCTGTGGAACCCATGGGAGAAGAGAGTGATCATGTCCATATTACTGCACTGTCAGATGCATTGGGGGTGCCAATTCGAGTTGTATACCTTGACCGAAGTTCATGTGATGTTGGTAAGACAGAAGTCAATCATCATGATTTCATACCTTCCAACTGCCTTTTAAAAGAAGCGGGATCAGAAACAATTGAGCCTTATGTAGTTTTACTGTATCGCCCGGGCCATTATGACATTCTTTATCCCAGGTCAAAGAGCGGTGTTTAA___GTGAGACACCACCTTTATAATTTGACTGGCTTAGGAAGTTACAGGCCTGATTTTATTGGATTTGCTTGAATATCACATTCTTGTAAAGATGCCTGGAATTAATGTTTGAGCTTTTAGCTGCAAGTGTAAATATGAACTTGGCAACGGTTGGCAAATTATAATTCCATTCAGATCCACTGCTGACTTTCCAACTTTAATCAAGACTGTTGAAGGAATGATTGTTTCTTATGTATATGCCATTCCTATTGTATGGAACCCGAGTCTATTAAGCTGTGGCAGGTTGTATTTGAAATACTGATTTCTGTGATTCATGAGTCATTGTTCACCCTTTAGTTCTAAATTACAATGAGCATTGTTTTTAGTTATGTG

Fln Alignment:

Contig5381___WTCYKXXXXXXXXXXXXXXXALKIPFVGDKESLSALAAEYETGSSILKAKIEVLDELYGAIRRTRGDGNCFFRSFMFSYLEHILETHDEAEVEHVLKNIEQCKKALLDLGYAEFTFEDFFSIFIDLLESVIPGRESSISIDTLIERIRDPLVSNYVVMFFRFVTSGEIRRRTEFFGPFIMGVSNGTVDQFCKTSVEPMGEESDHVHITALSDALGVPIRVVYLDRSSCDVGKTEVNHHDFIPSNCLLKEAGSETIEPYVVLLYRPGHYDILYPRSKSGV
A5YBN2_________________WTCYKDDDIIQQQNAIQAEEALKIPFVGDKESLSALAAEYETGSSILKAKIEVLDELYRVIRRTRGDGNCFFRSFMFSYLEHILETKDEAEVEHVLKNIEQCKKALLDLGYAEFTFEDFFSIFIDLLESVIPGRESSISIDTLIERIRDPLVSNYVVMFFRFVTSGEIRRRTEFFGPFIMGVSNGTVDQFCKTSVEPMGEESDHVHITALSDALGVPIRVVYLDRSSCDVGKTEVNHHDFIPSNCLLKEAGSETIEPYVVLLYRPGHYDILYPRSKSVV

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
769			80	20	0.995493
903	11			88	0.923564
925	88		11		0.923564
1076		33		66	1.0
1097	85		14		0.993533
1360	25	62			1.0
1361	25	75			1.0
1362	25	75			1.0
1363		75	25		1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain