SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5374

Length: 1887 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene5374

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15306	1/92
SustainPine v2.0	sp_v2.0_unigene15338	23/92
SustainPine v2.0	sp_v2.0_unigene15768	7/92
SustainPine v2.0	sp_v2.0_unigene16065	8/92
SustainPine v2.0	sp_v2.0_unigene16151	1/92
SustainPine v2.0	sp_v2.0_unigene16871	1/92
SustainPine v2.0	sp_v2.0_unigene24769	3/92
SustainPine v2.0	sp_v2.0_unigene24779	3/92
SustainPine v2.0	sp_v2.0_unigene60311	42/92
SustainPine v2.0	sp_v2.0_unigene83919	1/92

Source	Descriptions	Term	Type	Identity
AutoFact	Polyubiquitin 14 n=9 Tax=core eudicotyledons RepID=UBQ14_ARATH	-	-	100%
FL-Next	sp=Polyubiquitin; Petroselinum crispum (Parsley) (Petroselinum hortense).	-	-	100%
Blast2go	ubiquitin	-	-	99%

Source	GOs	Term	Type	Identity
Blast2go	response to UV-B	GO:0010224	Biological Process	99%
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	99%
Blast2go	aging	GO:0007568	Biological Process	99%
Blast2go	cellular protein metabolic process	GO:0044267	Biological Process	99%
Blast2go	vacuole	GO:0005773	Cellular Component	99%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ubiquitin	IPR000626	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P0CH05

Fln msg: ERROR#3, very serious frame error, warning!, putative chimeric sequence! or repetitive structure your sequence is longer than subject: 538 - 458

Fln protein: MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKKEFPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGNSSKMAELLLTTIFRRNPPCILFSV*EVACRSLSKPSQVRPLLWKWRARTP*IM*RLRYRTRKAFLLTSSV*FLLESSLKMAELLPTTISRKNPPCTWSYV*GVVCRSLLKL*PARRSPWKLKALILLIMLRRRSRIRKASLQTNRGSSSLVSSWRTVGPWQITTFRRNQRCTSCFV*EVVCRFS*KP*LGKLLPWR*RAPTPLIM*RRKFRIxxxxxxxxxxxxLLVSSWKMDVLWLIITFRRSLLCILCSDFVVVIFNC*

Protein Length: 539

Fln Alignment:

Contig5374___MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKKEFPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
P0CH05_________________MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1751	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain