SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5363

Length: 675 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene5363 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17231	54/54

Source	Descriptions	Term	Type	e value	Identity
AutoFact	parvulin-type peptidyl-prolyl cis/trans isomerase [Lotus japonicus]	-	-	2.94273e-44	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%
Blast2go	peptidyl-prolyl cis-trans isomerase pin1	-	-	0.0	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Peptidylprolyl isomerase.	EC:5.2.1.8	-	0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	protein peptidyl-prolyl isomerization	GO:0000413	Biological Process	87%
Blast2go	protein binding	GO:0005515	Molecular Function	87%
Blast2go	peptidyl-prolyl cis-trans isomerase activity	GO:0003755	Molecular Function	87%
Blast2go	plasma membrane	GO:0005886	Cellular Component	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidyl-prolyl cis-trans isomerase, PpiC-type	IPR000297	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
307	90		10		0.90298
317		10		90	0.90298
647		15	85		1.0
649	5	5	80	10	0.99967
670			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain