SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5357

Length: 1159 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene5357 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15839	57/57

Source	Descriptions	Term	Type	Identity
AutoFact	DNA-damage-repair/toleration protein DRT102, putative n=1 Tax=Ricinus communis RepID=B9RES2_RICCO	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	dna-damage-repair toleration protein drt102	-	-	74%

Source	GOs	Term	Type	Identity
Blast2go	photoreactive repair	GO:0000719	Biological Process	74%
Blast2go	response to cold	GO:0009409	Biological Process	74%
Blast2go	response to UV	GO:0009411	Biological Process	74%
Blast2go	cytoplasm	GO:0005737	Cellular Component	74%
Blast2go	nucleus	GO:0005634	Cellular Component	74%

Source	InterPros	Term	Type	e value	Identity
Sma3	DNA-damage-repair/toleration protein, DRT102	IPR012100	-	0.0	-
Sma3	Ribose/galactose isomerase	IPR003500	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NK44

Fln msg:

Fln protein: MGSTDAKKPLKIIAGADDFGCALKDFLIEYLRSKGIEVQDLGTDKYYNVGEEVGRRVSEAQHSENQAEIKGLVACGTGVGVSIFANKFPGVYSVTCDSVEDAQNCRSINNSNVIAVGGMHTTPEEGKKILDAWLDTPFKAPCPASKGNPWPPEIAGFLENSLQEMPKIPEHSKPQSESSCALCSLSKTRNFQDVDIMPGGSMSIVRESPTAAIVKFKAGSIEPAHHHTFGHDLLVVSGSKRVWNLTKNQCFDLGPGDYLYTPAPDVHRVQYFTDTEFFIRWDGHWDIFLDEDLPTAADHIKANAEESK*

Protein Length: 310

Fln nts: ATGGGGTAACCCAAAGAGTTTACTAACTCCGCAGATGCAAACCACTTGGGTGCAGCACAATCCCAAGTCCAGGTGCATGCACCTGTCTGCACAAACTCCTCCCTCTCCATTCGACACTACCCTCACTCCATTCATTGCTTTTCCAACCTCCCAAACCCTCCTCATTGGCGGTCCAGGAAA_-_ATGGGAAGCACTGACGCCAAGAAGCCTCTCAAAATCATTGCAGGAGCTGATGACTTCGGCTGCGCGCTCAAAGATTTCCTTATCGAATACCTCCGATCAAAGGGTATCGAGGTCCAGGATCTCGGCACCGATAAGTACTACAATGTCGGGGAAGAAGTCGGCAGAAGGGTGAGCGAAGCCCAGCACAGTGAAAATCAAGCGGAAATCAAGGGACTGGTGGCCTGCGGAACCGGTGTCGGGGTCTCCATTTTTGCCAACAAGTTCCCAGGCGTGTATTCTGTCACCTGCGATTCCGTGGAGGATGCCCAGAACTGCAGGTCGATCAACAACTCGAACGTTATAGCAGTTGGAGGAATGCACACCACCCCCGAAGAGGGCAAGAAGATACTCGATGCCTGGCTGGACACCCCTTTCAAGGCCCCCTGCCCTGCCAGCAAAGGGAATCCATGGCCGCCTGAGATCGCTGGCTTTTTAGAAAATTCCTTACAGGAAATGCCCAAAATACCCGAACACAGCAAGCCTCAATCCGAATCCTCCTGCGCTCTCTGTTCATTAAGCAAAACGAGAAACTTCCAGGATGTGGATATCATGCCCGGGGGATCCATGAGCATCGTGCGAGAAAGCCCTACTGCTGCCATTGTCAAATTCAAGGCCGGAAGTATCGAGCCGGCGCATCACCATACCTTTGGGCATGATCTTCTTGTTGTGTCTGGGTCGAAGAGAGTGTGGAATCTCACTAAGAACCAATGCTTCGATTTGGGCCCCGGGGATTATCTCTATACTCCTGCGCCTGATGTGCACAGGGTGCAGTATTTCACGGATACTGAGTTTTTCATCAGATGGGATGGGCATTGGGATATATTTCTGGACGAGGATTTGCCCACAGCAGCCGATCACATTAAGGCAAACGCAGAGGAATCCAAATAG___GTGTTTTTGCGTGTGCGTAGAAGCTCATATGCAGGTGCAAGCAATAAGCTAA

Fln Alignment:

Contig5357___MGSTDAKKPLKIIAGADDFGCALKDFLIEYLRSKGIEVQDLGTDKYYNVGEEVGRRVSEAQHSENQAEIKGLVACGTGVGVSIFANKFPGVYSVTCDSVEDAQNCRSINNSNVIAVGGMHTTPEEGKKILDAWLDTPFKAPCPASKGNPWPPEIAGFLENSLQEMPKIPEHSKPQSESSCALCSLSKTRNFQDVDIMPGGSMSIVRESPTAAIVKFKAGSIEPAHHHTFGHDLLVVSGSKRVWNLTKNQCFDLGPGDYLYTPAPDVHRVQYFTDTEFFIRWDGHWDIFLDEDLPTAADHIKANAEESK
A9NK44_________________MGSTDAKKPLKIIAGADDFGCALKDSLIEHLRSKGIEVQDLGTDKYYSVGEEVGRRVSEAQHNENQAEIKGLVACGTGVGVSIFANKFPGVYSVTCDSVRDAQNCRSINNSNVIAVGGMHTTPEEGKKILDAWLDTPFKAPCPASQGNPWPPEIAGFLENSLQEIPKIPQHDKPQSESSCALCSLSKTRNFKDVDIMPGGSMSIVRESPTAAIVKFKAGSIEPAHHHTFGHDLVVVSGSKRVWNLTKNQCFDLGPGDYLYTPAPDVHRVQYFTDTEFFIRWDGHWDIFLDEDLTTAADRIRATAGESK

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
947		9		90	0.999872
1010	47		52		1.0
1013			64	5	1.0
1039		12	87		0.992554
1040		25	75		1.0
1041		25		75	1.0
1042	50	50			1.0
1043	25	25	50		1.0
1044		25		75	1.0
1045		28	71		1.0
1076		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain