SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5352

Length: 1103 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene5352

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15172	59/59

Source	Descriptions	Term	Type	Identity
AutoFact	Proteasome subunit alpha type n=1 Tax=Picea sitchensis RepID=A9NP38_PICSI	-	-	99%
FL-Next	sp=Proteasome subunit alpha type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	proteasome subunit alpha	-	-	93%

Source	GOs	Term	Type	Identity
Blast2go	copper ion transport	GO:0006825	Biological Process	93%
Blast2go	peptidase activity	GO:0008233	Molecular Function	93%
Blast2go	copper ion transmembrane transporter activity	GO:0005375	Molecular Function	93%
Blast2go	proteasome complex	GO:0000502	Cellular Component	93%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	93%
Blast2go	cytosolic ribosome	GO:0022626	Cellular Component	93%

Source	InterPros	Term	Type	e value	Identity
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	0.0	-
Sma3	Proteasome, alpha-subunit, N-terminal domain	IPR000426	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NP38

Fln msg:

Fln protein: MSRGTGAGYDRHITIFSPEGRLYQVEYAFKAVKAAGITSIGVRGKDSICVVTQKKVPDKLLDQTSVTHLFPITKFIGLLATGMTADARSLVQHARNEAAEFRFKWGYEMPVDVLARRLADKSQVYTQHAYMRPLGVAAIVLGIDEESGPQLFKCDPAGHFVGYKATAAGVKESEAVSFLEKKLKNNPELSYEETVQTAVSALQSVLQEDFKATEIEVGVVTKESPVFRTLSTEEIDEHLTAISERD*

Protein Length: 248

Fln nts: TATGGGGTCGGTGCGCTGACATTCTACTTTAGCTTTAACTTTGGCGTAGGGAAGAAGAAAACAAAAGCCCTTGCTCTCGACACTGCATTTTTCCTGCACTTAGGGTTTGAGATCTGAACTACGAGGATTTACCTGATATTTTCAGA_-_ATGAGTCGCGGTACCGGAGCTGGATACGATCGTCACATCACAATATTTTCACCAGAAGGTCGACTGTACCAAGTCGAATATGCTTTCAAAGCAGTGAAGGCCGCGGGAATCACATCCATAGGTGTGCGCGGGAAGGATTCGATTTGCGTCGTTACACAGAAAAAAGTGCCAGACAAATTACTTGATCAGACTAGTGTGACCCATCTTTTTCCAATTACAAAATTCATTGGGTTATTAGCAACTGGCATGACTGCTGATGCAAGGTCATTAGTTCAGCATGCACGGAATGAGGCAGCAGAGTTCCGTTTCAAATGGGGTTATGAAATGCCTGTAGACGTGCTAGCTAGAAGGCTTGCAGATAAGTCTCAAGTTTATACACAACATGCATACATGAGACCACTTGGAGTAGCTGCTATAGTACTTGGTATTGATGAAGAGTCTGGACCTCAACTATTCAAATGTGATCCGGCTGGTCATTTTGTTGGTTATAAGGCAACTGCTGCTGGTGTCAAGGAGTCAGAGGCAGTCAGTTTTCTGGAGAAGAAATTGAAGAATAATCCAGAGTTATCTTATGAGGAAACTGTACAGACAGCAGTCTCTGCACTCCAATCTGTTCTTCAGGAGGATTTTAAGGCTACAGAAATAGAGGTCGGTGTTGTTACAAAAGAAAGTCCAGTATTTCGTACTTTATCAACAGAAGAGATTGATGAACATCTGACAGCGATCAGTGAGCGGGACTAA___ATATCTGAAGTTGAGAAAAGTTCTCTAAATCTGCAGTTCCTTTTTATTGTTGATTCTGCTAGTGCAGCAGAAGAAAATCTCTGAATGAAGAGCGAATGTTAATGAAATGCCAGTCCCATGAGTTTGGGTATATTCTATGGGTTTACATCTGGAATGGTTGGTGCAATTATTATTTGAATGCTTGAAAACATGAATTTTAGAATACATCAAGTTTCA

Fln Alignment:

Contig5352___MSRGTGAGYDRHITIFSPEGRLYQVEYAFKAVKAAGITSIGVRGKDSICVVTQKKVPDKLLDQTSVTHLFPITKFIGLLATGMTADARSLVQHARNEAAEFRFKWGYEMPVDVLARRLADKSQVYTQHAYMRPLGVAAIVLGIDEESGPQLFKCDPAGHFVGYKATAAGVKESEAVSFLEKKLKNNPELSYEETVQTAVSALQSVLQEDFKATEIEVGVVTKESPVFRTLSTEEIDEHLTAISERD
A9NP38_________________MSRGTGAGYDRHITIFSPEGRLYQVEYAFKAVKAAGITSIGVRGKDSICVVTQKKVPDKLLDQTSVTHLFPITKFIGLLATGMTADARSLVQHARNEAAEFRFKWGYEMPVDVLARRLADKSQVYTQHAYMRPLGVAAIVLGIDEESGPQLFKCDPAGHFVGYKATAAGVKESEAVSFLEKKLKNNPELSYEETVQTAVSALQSVLQEDFKATEIEVGVVTKDSPVFRTLSTDEIDEHLTAISERD

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
792	11			88	0.923564
899			80	20	0.995493
982	16	83			0.994512
1054	66		33		0.997452
1068		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain