SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5332

Length: 1179 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene5332

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17252	65/65

Source	Descriptions	Term	Type	Identity
AutoFact	Probable ubiquitin-conjugating enzyme E2 n=3 Tax=Picea RepID=O65079_PICMA	-	-	96%
FL-Next	tr=Probable ubiquitin-conjugating enzyme E2; Picea mariana (Black spruce) (Abies mariana).	-	-	96%
Blast2go	ubiquitin-conjugating enzyme e2	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	protein ubiquitination	GO:0016567	Biological Process	82%
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	82%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	0.0	-
Sma3	Ubiquitin-conjugating enzyme, E2	IPR000608	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: O65079

Fln msg:

Fln protein: MAETACVKRLQKEFRALCKEPVPNVVARPSPNDILEWHYVLEGSEGTPFAGGVYHGKVKFPPEYPYKPPGISMITPNGRFATHKRICMSMSDYHPETWNPMWSVSSILTGLLSFMMDNSPTTGSVSTTVADKQRLAKASLAFNCKSSIFRKMFPEYAERYAEQQKAENMNSELVSNKGDAKPSTTVAQEQSQAVRHNDKETGHKGIKRGGSKNFPTWLLVLLMAVFGSVMALPLLSLDLTNL*

Protein Length: 244

Fln nts: ATGGAGGGAGTTGAATTGCATTTGTCCATCGTTTTTTCTCCGATTCGAGCATTACACAACCAAAATACATTTCGCGAAATTGTTCGTTCCGGCCAAGGATCGAACCTGCGACGGACCTTTCATGCAACGTGAGAAGTGAGAGGAGGCTGGCATTTGAGTTGGCACGTTGGTATTGTTGCTTTCAGAGAATCTGAGTGTGGCCTGTTGCACTTGCTGA_-_ATGGCAGAAACTGCGTGTGTCAAACGTCTGCAGAAAGAATTCCGAGCTTTGTGTAAAGAACCGGTTCCTAATGTTGTAGCACGTCCTTCACCAAATGATATTCTTGAGTGGCATTATGTACTAGAAGGAAGTGAGGGTACACCGTTTGCAGGTGGAGTTTATCATGGAAAGGTTAAGTTTCCTCCCGAGTATCCATACAAGCCTCCAGGCATCAGTATGATCACTCCAAATGGGCGGTTTGCAACACACAAGAGGATCTGCATGTCTATGAGTGACTATCATCCTGAAACGTGGAATCCAATGTGGTCAGTCTCAAGTATTTTGACGGGACTGCTTTCCTTTATGATGGATAATAGTCCAACAACTGGCAGTGTCTCCACAACAGTGGCAGATAAGCAACGTCTGGCAAAAGCTTCTCTTGCTTTTAACTGTAAGAGTTCAATATTTCGAAAAATGTTTCCAGAGTATGCGGAGAGGTATGCTGAACAACAAAAAGCTGAAAACATGAATTCTGAATTGGTATCAAACAAGGGAGATGCAAAACCCTCCACAACTGTTGCTCAGGAGCAATCACAGGCAGTCAGACACAATGACAAAGAGACAGGACACAAGGGGATCAAGCGTGGAGGATCAAAGAATTTCCCTACATGGCTATTAGTTTTACTAATGGCAGTTTTTGGTAGTGTAATGGCCTTGCCATTGCTTAGCCTGGACCTGACTAACTTATAA___AAACAATACTTCTTGCTCTAACACTCGTGGAAGTTTGTGAGATGATGCCAGTTAATCTTGAGAGTCAACTAAGTTTAAGTTGTCTAGTGACTGGAATCTTTCAATCTGCTTTTGTAACCTTAGACATTGTACAAAATCCTGTTAAACATGTTATGATTGCAATGGTTTTGCTCTAAACAATTGTACGGTGTTGGATTATTACGAGCAATTGGCTTTGTTTTATTATGAATTTC

Fln Alignment:

Contig5332___VKRLQKEFRALCKEPVPNVVARPSPNDILEWHYVLEGSEGTPFAGGVYHGKVKFPPEYPYKPPGISMITPNGRFATHKRICMSMSDYHPETWNPMWSVSSILTGLLSFMMDNSPTTGSVSTTVADKQRLAKASLAFNCKSSIFRKMFPEYAERYAEQQKAENMNSELVSNKGDAKPSTTVAQEQSQAVRHNDKETGHKGIKRGGSKNFPTWLLVLLMAVFGSVMA
O65079_________________VKRLQKEFRALCKEPVPNVVARPSPSDILEWHYVLEGSEGTPFAGGVYHGKVKFPPEYPYKPPGISMITPNGRFATHKRICMSMSDYHPETWNPMWSVSSILTGLLSFMMDNSPTTGSVSTTVADKQRLAKASLAFNCKSSIFRKMFPEYAEKYSEQQKAENMNSELTSNKGDAKPSTTVAQEQSQAIRHNDKETGHKGPKRGRSKNFPTWLLVLLMAVFGSVMA

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
632	88		11		0.923564
925		11		88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain