SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5325

Length: 1166 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene5325

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21441	69/69

Source	Descriptions	Term	Type	Identity
AutoFact	Rubber elongation factor n=1 Tax=Morus alba RepID=C9E7B4_MORAL	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	rubber elongation factor	-	-	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuole	GO:0005773	Cellular Component	0.0	69%

Source	InterPros	Term	Type	e value	Identity
Sma3	Rubber elongation factor	IPR008802	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNP5

Fln msg:

Fln protein: MAVEDTEVETKQVQEEARLKYLGIFQIAVLRATVFLSNLYDYAKENAGPLKPGVDTVEQTVKTVVGPVYLKFDGKPLQLLHFLDRKVDDTIGKVNEFVPPTVKHRTCEVYDMAKQAPDVARSVISEIQRSGIIETANGTARSLYTKYEPTAKDLYAKHEPAAQKWALFAYHKLLQLPLFPQLVHILIPTATYWTDKYNHTVVYLAERHYRVADFLPSVPVEKIRKALERGLEETKHAEIHTAS*

Protein Length: 245

Fln nts: ATGGGGCTCAAAGGGATTTCTGTGTTCTTTATTTTGTTGCAATATCTCAACGTTTTCGTTGACAGTCGCAAGAAGTAGATCTGACTGTAAGGTTTGACCTAGTTCTCTGAAATTTATCATACAATAGGGTTTGTGTGCGCTCCTCCGATCAATAAACA_-_ATGGCAGTGGAAGATACAGAGGTAGAGACGAAGCAGGTTCAAGAGGAGGCGAGGCTCAAATATTTGGGCATTTTCCAAATTGCCGTGTTGAGGGCAACCGTTTTCCTTTCTAATTTATACGATTATGCCAAGGAGAACGCAGGACCTCTGAAGCCCGGCGTCGATACAGTGGAGCAGACCGTGAAGACCGTGGTTGGCCCTGTGTATCTCAAATTTGATGGAAAACCCCTTCAGCTTCTTCATTTCCTTGATCGAAAGGTTGATGACACAATTGGCAAAGTAAATGAATTTGTGCCACCAACAGTGAAGCACAGAACATGCGAGGTATATGATATGGCAAAACAAGCACCTGATGTTGCGAGATCTGTCATAAGTGAAATACAAAGGAGCGGTATAATTGAAACTGCAAATGGAACAGCAAGGAGCTTGTATACCAAGTATGAGCCAACTGCCAAGGATCTTTACGCCAAACATGAACCTGCTGCACAAAAATGGGCGCTGTTTGCTTATCACAAATTGCTTCAGCTTCCCTTGTTTCCCCAGCTGGTTCATATCCTAATTCCAACTGCTACATATTGGACGGATAAATATAATCATACTGTTGTTTATCTTGCTGAAAGGCATTATCGCGTTGCAGATTTTCTCCCGTCGGTTCCTGTTGAGAAAATCAGGAAAGCCTTAGAAAGGGGCTTGGAAGAAACTAAGCACGCTGAAATTCATACTGCTTCCTGA___TTCCAGATGACATAGGTGGTGTTCAGGAGATCTGTGGGGTTTGTGATGGAACGAGATGGTACACTTCTGGCATGAATATTTGTGCAATAAATAATATATCCATAGTCATGTTTATTGTTTTGCGGTAGCTTAGATTAGTCTGGCAGAGTCTCTTTTGCTTGACTAATGATGTAGCTGTATATTCTTCCATAGATACTTCTGGAACTTCTATGGAATCATCCTACACGATGAGCTACTTGTGGCTTGTATGAACATATTTATTCGGTTGGAAATTGG

Fln Alignment:

Contig5325___MAVEDTEVETKQVQEEARLKYLGIFQIAVLRATVFLSNLYDYAKENAGPLKPGVDTVEQTVKTVVGPVYLKFDGKPLQLLHFLDRKVDDTIGKVNEFVPPTVKHRTCEVYDMAKQAPDVARSVISEIQRSGIIETANGTARSLYTKYEPTAKDLYAKHEPAAQKWALFAYHKLLQLPLFPQLVHILIPTATYWTDKYNHTVVYLAERHYRVADFLPSVPVEKIRKALERGLEETKHAEIHTAS
A9NNP5_________________MAVEEAEVETKQVQEEAKLKYLGFFQIAVLRAAVCLSSLYKYAKENAGPLKPGVDTVEQTVKTVVSPVYLKFDGKHLELLHFLDRKVDDTIGKVDEFVPPILKQRTCEVYDMAKQVPDVARSVISEIHRSGIIETASETARSLYTK---SVKDLYTKHEPVAQEWGLFAYHKLLQLPLLPQLVHILIPTATYWTDKYNHTVVYLADRHYRLADFLPLVPVERIRKLLERDLEETKKAEIHTAS

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
709		90	10		0.90298
710	90		10		0.90298
711			10	90	0.90298
765		11		88	0.923564
1014		90		10	0.90298

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain