SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5322

Length: 1493 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene5322 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15559	73/73

Source	Descriptions	Term	Type	Identity
AutoFact	40S ribosomal protein SA n=1 Tax=Glycine max RepID=RSSA_SOYBN	-	-	94%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	40s ribosomal protein sa	-	-	92%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S2	IPR001865	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	Ribosomal protein S2, eukaryotic/archaeal	IPR005707	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AEF0

Fln msg:

Fln protein: MGTKGVLSQKEADIQMMLAADVHLGTKNCDFQMERYVYKRRSDGIFIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQFTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIREAALGNIPTIAFCDTDSPMKHVDIGIPANNKGKHSIGCLFWMLARMVLQMRGTIVPGRKWDVMVDLFFYREAEEAKEREEEEVAPAEYVPNFTLGAEQWPTEVADAQWESEAPAVPSIVPPVASADWMAAPVPEAVAWDMAAAPAIPAAAGWDAAIPAAAGWDAAPVPQQPLAGMGATSWEPAPAAPTNWS*

Protein Length: 327

Fln nts: ATGGGGGTGACCAACTCGAACAAGTGATTATTGCTAGGGTTTTATCCAGTAATGGGGAGTAAGGGTTTGGGTGAAACGCGATCGGCGTTTATTAGCAAAAGGCCGCATACAGCCCATGGTTACAGCGGTGTCGGAGTATCATCCATACGAGGACAGATTCCGCTAGTAGATCTGTTACAGAGCTCAGATTCTGTTGCAGAGAAGAA_-_ATGGGTACCAAGGGGGTTTTATCTCAGAAAGAAGCAGACATTCAAATGATGCTGGCAGCAGATGTTCACCTCGGCACTAAAAACTGCGATTTTCAGATGGAGCGTTACGTTTACAAGAGACGCTCAGACGGTATATTTATCATCAACTTGGGTAAGACTTGGGAAAAGCTGCAGCTTGCTGCAAGAGTAATTGTAGCAATAGAGAACCCTCAGGATATAATTGTACAATCTGCAAGGCCATATGGTCAGCGAGCAGTTCTGAAATTTGCCCAATTTACTGGAGCTCATGCAATTGCTGGCAGGCATACACCTGGAACATTTACAAATCAGCTTCAGACATCATTTTCTGAGCCTCGTCTTCTGATTCTTACTGATCCAAGGACTGACCATCAGCCTATAAGAGAAGCAGCCCTTGGTAATATTCCCACTATTGCTTTTTGCGACACAGATTCTCCAATGAAACATGTTGACATTGGTATTCCTGCAAATAACAAGGGCAAGCACAGCATTGGTTGTCTGTTTTGGATGTTAGCAAGGATGGTTTTACAGATGCGAGGGACAATTGTACCAGGTCGTAAATGGGATGTCATGGTTGACTTATTCTTTTACAGGGAGGCAGAAGAAGCGAAGGAAAGAGAAGAAGAGGAGGTTGCTCCAGCTGAGTATGTTCCTAATTTTACTCTTGGTGCAGAGCAATGGCCTACAGAGGTTGCTGATGCTCAGTGGGAATCTGAAGCACCTGCAGTTCCTAGCATTGTGCCTCCAGTTGCTAGTGCTGATTGGATGGCAGCTCCTGTTCCGGAAGCTGTGGCATGGGATATGGCAGCTGCTCCAGCCATACCAGCAGCTGCAGGGTGGGATGCAGCCATACCGGCAGCTGCAGGGTGGGATGCAGCCCCTGTTCCGCAACAACCTCTAGCTGGAATGGGTGCAACTAGTTGGGAACCTGCTCCTGCTGCACCCACAAATTGGTCTTAA___TAGTTTATCTTTGGGAGGGAAGAAGCCTTGAAATTACATTGCTTTCTCTCCAGTAATATCAATTTTTTGACTTCTATATTTGATGTACTGTGAAACGTGTCTCAATTTTTGTCAGTGGTCTTCAGTTGTGACTTGGACTGCGTTATGAAATCAATACTGCAGTTGCAAATACATGGCATTGCTGAAACATATATTAGATGGCTTGCACTAATTTATTAGCTTATTGTTAGGCTATTCGTTCTAGCTCATCCTACTTTTAAACACTGCTCTATTGAACAGGTTTTTGGAAATTAACTGTACTGTTTCATA

Fln Alignment:

Contig5322___MGTKGVLSQKEADIQMMLAADVHLGTKNCDFQMERYVYKRRSDGIFIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQFTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIREAALGNIPTIAFCDTDSPMKHVDIGIPANNKGKHSIGCLFWMLARMVLQMRGTIVPGRKWDVMVDLFFXXXXXXXXXXXXXXXXXXXXXPNFTLGAEQWPTEVADAQWEXXXXXXXXXXXXXXXADWMAAPVPE---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQQPLAGMGATSWEPAPAAPTNWS
D5AEF0_________________MGTKGVLSQREADIQMMLAADVHLGTKNCDFQMERYVYKRRSDGIFIINLGKTWEKLQIAARVIVAIENPQDIIVQSARPYGQRAVLKFAQFTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIREAALGNIPTIAFCDTDSPMKHVDIGIPANNKGKHSIGCLFWMLARMVLQMRGTIAPGRKWDVMVDLFFYREPEEAKEREEEEVAQAEYVPTFTLGAEQWPTEVADAQWESEAPAVPGIVPPVAGADWMAAPVPDAVGWDMAAAPAIPAAAAAGWDAAMPAVAAGWDAAPVPQQPLAGVGTASWEPAPAAPSSWA

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
959	80	20			1.0
1376	50	50			1.0
1377	50	50			1.0
1379	8	33	41		1.0
1418		16	83		0.994512
1420		16	83		0.994512
1421		16		83	0.994512
1423	16			83	0.994512
1425	80	20			0.995493
1430	75			25	0.996473
1440		33	66		0.997452
1441		33	66		0.997452
1444	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain