SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5319

Length: 1544 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene5319

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15451	62/64
SustainPine v2.0	sp_v2.0_unigene65732	1/64

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative VAMP protein SEC22 [Arabidopsis thaliana]	-	-	1.0e-32	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Blast2go	vamp protein sec22	-	-	0.0	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	defense response to virus	GO:0051607	Biological Process	0.0	62%

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR010847	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LL00

Fln msg:

Fln protein: MSGKGGNKDCGNHSRPFFGPARPIRRCMSSLCVLVIIALLVILIVFLVLHPHKPRFYVQDATVRELNLTNGVLTTMVQFSIVSHNPNDRIGVYYDSLSAYATYEGQQITPPCSLTPFYQGDDDYDVLSPVLTGINVALAPFVADHLNYEKQNHLLSLTLKMYGRIRWKVGTWTSGHYHLNVNCFAIMGMVNTGNGQVPLQPGTRCDVEV*

Protein Length: 211

Fln nts: ATGGGACTGGCGGGCGCGTTGGCCTGAGCTTTTCTTTCTTTGTTCTGCGACGCTGCAACGACCTGGAGCTAAACGTTTCTCGTGTGTGGATTACAGAGCTTTGGCCAATCGGCTCTCGACATTAAAGAATACAGTACAGTACAGTAAGCCTCCGACCTGAAACGGACGATTCTCGGATCGGGCGGTTTCTGTTGGAGCTTCGACCGCCAGTACGCTAGCCGAAGGTTCGAAGGTTCGTCCAACCTTCCGTGATCCTGTCCTTTTTATATTGCAGTAGCCCTAGTATTTATGCTCAGATCAGATCCATTCGTTTCGATTTGGCCTCTCTTTCTGCTGAGCGTCAGAAATTCTGGCATCACAGTGCTAATTGTAGGGCTGATTTGATTCAGAATTTTGTCTCGAGGAGAGAATTAGGGGCGCCAAGCTTCAGAC_-_ATGTCAGGGAAAGGGGGCAACAAGGACTGCGGCAACCATTCAAGGCCGTTTTTCGGACCGGCGAGGCCCATCCGGAGATGTATGAGTTCTCTGTGCGTGCTCGTCATCATCGCGCTCCTGGTGATCCTGATCGTCTTCCTGGTTCTGCACCCGCACAAGCCACGATTCTATGTTCAGGACGCTACGGTGCGCGAGCTGAATCTCACCAATGGCGTGCTCACCACGATGGTCCAGTTCTCCATCGTCTCGCACAACCCGAATGACAGGATCGGTGTCTACTACGACAGCCTCAGCGCCTACGCCACTTACGAGGGGCAGCAGATCACGCCCCCCTGCTCGTTGACCCCTTTCTACCAGGGCGACGACGATTACGACGTGCTGTCTCCGGTTTTAACCGGGATCAACGTTGCCCTGGCGCCCTTCGTGGCCGATCATCTGAACTACGAGAAGCAGAACCACTTGCTGAGCTTGACTCTAAAGATGTACGGGAGGATCCGCTGGAAGGTGGGCACCTGGACTTCTGGGCATTATCATTTGAATGTCAATTGCTTTGCTATCATGGGAATGGTTAACACCGGCAATGGACAAGTTCCTCTGCAGCCCGGCACCAGATGCGATGTGGAGGTCTGA___ATGTGAGTTTTTATAGGTTAAATTAAATTATATCAGAATTTCATGGTACAGTAGGGTAGTCACTATGTTTCAGGTTTTATTTGAATAATTTGAGCAACCCCTTTCTCCATTCAATAAAATTTCTTCTGTATGTATGGTCTACTTTAGTTTTTCTGCAGAGACTCTGGACTGGAATATGAATTTACCAGTCAGAGCTTAACAGCCCCACCTTACCGAATTGGGAAGTAAGGAAGGAATGGGCTTCAGAGCTATAGTGTTTAGGTTCAGGGCAAATAATGGCTGCTGAGGAGAAACTAACTCTTCATTTTCTGAACTTTTAGTTGGGCGGCCTTAGATGTAATATTTAACTTCTTAGCTTTTCACTCCATGGCTCCGTTGATTCTCAAGCCATAAATGGTGTGAGGGATGTCTATTATTTCTTCCATATGCCATTACTCTGTAAATATCCCAAAGTTCTAATAATGACAATAATGTTAAGAGGG

Fln Alignment:

Contig5319___MSGKGGNKDCGNHSRPFFGPARPIRRCMSSXXXXXXXXXXXXXXXXXXXHPHKPRFYVQDATVRELNLTNGVLTTMVQFSIVSHNPNDRIGVYYDSLSAYATYEGQQITPPCSLTPFYQGDDDYDVLSPVLTGINVALAPFVADHLNYEKQNHLLSLTLKMYGRIRWKVGTWTSGHYHLNVNCFAIMGMVNTGN-GQVPLQPGTRCDVEV
B8LL00_________________MQGKGGSKDCGNHGSPRLLPGRGFRRCMGSLFVLVVIALFVILVVYLVLHPHKPRFYVQDATVHQLNLTNGLLTSSLQFSIVSHNPNDRIGVYYDSLNAYATYAGEQITPQCSLTPFYQGDNDVDVLSPILYGNSVALAPFVADHLNYEKQNGVLSLTLKMYGRIRWKVGSWTSGRYHLNVNCFAIMGMRNSGNAGQVPLQPGTRCDVEV

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
918		90		10	0.90298
1097	85		14		0.993533
1113		14	85		0.993533
1268		85		14	0.993533
1279	85		14		0.993533
1286	66	33			1.0
1377		10		90	0.90298
1407		37		62	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
130	146	TACAG TACAG TACAG TA	17

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain