SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5314

Length: 2451 nt

UniGene Fasta

>biog2_v2.0_unigene5314
ATGGGGGGTCGAGGCGAAGAGGGTTTTAGTGAGGGTTTTAGGGCCTGAGAGGAGCCGATAAAGCGACCGTAGCGCGTCAGAGGGATTTTCTAAACAGACGTCCGATCTAGCTTGCTGCATGATTTTTAAAGTTTAGGTCTTTTGAAGCTCCTGATCAGTTCGGAAGAAGGAGAAAGCGATGGCTTTAGGTTCGCTATTGGTGTCCAGGCTTGCAAGGTCTCAGTCGAAGGGTATCGCTTCAAATGTTGTTCAATCTGCATATCTGGCTACACAGAATATTAAATCTTCAAACTTTGGTTCGCCACTGATACAGAGATGGGGAAATGCAGCCAGAGCTTTCAGCTCAAAGGGAGCTGGTAATGATGTGATTGGTATTGATTTGGGAACAACAAATTCATGTGTTGCTCTCATGGAAGGCAAGAACCCCAAAGTCATTGAAAACTCAGAAGGTGCACGGACAACCCCATCTGTTGTTGCTTTTAATCAAAAGGGAGAGCTTCTTGTAGGCACTCCTGCTAAGCGACAAGCTGTGACAAATCCAACAAACACAGTGTTTGGAACAAAGCGTTTGATAGGAAGGCGATTTGATGACCCACAGACGCAGAAAGAGATGAAGATGGTCCCATACAAAATTGTTAAGGCAACCAATGGTGATGCCTGGGTTGAAGTAAATGGGAACCAGTATTCGCCGAGTCAGATTGGAGCATTCATCTTGACAAAGATGAAAGAAACAGCTGAAGCTTATCTAGGGAGGTCTGTATCAAATGCAGTCATTACAGTGCCGGCCTATTTCAATGATGCTCAGCGTCAAGCAACTAAAGATGCTGGAAAAATTGCTGGTTTAGATGTGAAAAGAATTATCAATGAACCAACAGCAGCTGCCCTTTCATATGGTATGAATAACAAGGAAGGTTTGGTTGCTGTTTTTGATCTCGGCGGTGGAACTTTTGATGTTTCAATACTTGAAATATCTAATGGTGTTTTTGAGGTGAAAGCCACAAATGGTGATACCTTCTTGGGTGGTGAGGATTTTGATAACACTTTACTTGACTATCTTGTTTCGGAGTTCAAAAAATCAGAAGGCATCGACTTGTCTAAAGATAGGTTGGCCTTGCAAAGGTTGAGAGAGGCTGCAGAGAAGGCGAAGGTGGAATTGTCATCTTCTTCGCAGACTGATGTTAATCTGCCATTTATCACAGCAGATGCATCTGGGGCCAAGCATTTGAATATCACTTTAACTCGATCAAAGTTTGAAAATTTGGTTAATCACTTAATTGAGAGAACCAGAGATCCTTGCAAGAATTGCTTGAAAGATGCGGGGGTCTCAATAAAGGAAGTGGATGAAGTGCTTCTTGTAGGAGGTATGACTCGAGTGCCTAAGGTTCAAGAAATTGTATCAGAGATCTTTGGTAAGCAACCAAGTAAAGGTGTGAACCCTGATGAGGCTGTTGCCATGGGTGCTGCCATTCAGGGTGGTATACTTCGTGGTGATGTGAAAGAGTTACTTCTTCTTGATGTTACTCCTCTGTCATTGGGAATTGAAACTCTTGGTGGTGTATTTACACGGCTTATCAACAGAAACACCACAATTCCAACAAAGAAAAGTCAGGTGTTTTCAACTGCTGCAGATGGTCAAACTCAGGTAGGAGTGAGAGTATTGCAAGGTGAGCGTGAAATGGCTTCAGATAATAAGCTGCTTGGTGAGTTCGAGCTTGTTGGCATTCCACCAGCACCCAGAGGTGTACCTCAAATAGAGGTTACCTTCGACATTGATGCAAATGGTATTGTGACTGTATCTGCTAAAGACAAAGCCACGAACAAGGAACAGAATATCACTATCCGGTCGTCTGGAGGACTGACAGAAGACGAGATACAGAAAATGGTGAGAGAGGCTGAGATGCATGCTCAAAAAGATCAGGAAAAGAAGGCATTAATCGATGCTAGAAATGCTGCAGACAGCACGATATACTCAGTAGAGAAGAGTTTGAGCGAATATAAAGACAAACTTTCTTCAGATGTCATTTCTGAAATAGAGTCAGCTGTAACAGACTTAAAGAAAGCAATGGCTAATGATGATGTTGAAGATATCAAAGCAAAAACTGATGCAGCAACTGCAGCATCCTTGAAAATAGGCCAGAGTGTGCAGCAACAATCTGGTGGCTCATCCTCTGGTTCTCAAGGTGGATCTCAAGGCGGAGACCAGGCACCAGAGGCTGAATATGAAGAGGTCAAGAAGTGATTTAGGCAATTGAGGTCGAATCTGAGGTTATCTAGGAGATGCTAGGTACAAAATTACTAGTTTGAAAATTCAAAACTGTTATAAGCAAATATTTAGAGATGCCTAAATGCAGCCATTTTTGTTCTGAGCAAGAAATATATTTTTCATGTTATGACTGTTGACACTGAAGAGGAGAAATCTGTAGTTATCATATTGAACTCTACAAAATTCTT

Ace file of the UniGene biog2_v2.0_unigene5314

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22523	76/76

Source	Descriptions	Term	Type	Identity
AutoFact	Heat shock 70 kDa protein, mitochondrial n=3 Tax=rosids RepID=HSP7M_PHAVU	-	-	80%
FL-Next	sp=Heat shock 70 kDa protein, mitochondrial; Phaseolus vulgaris (Kidney bean) (French bean).	-	-	81%
Blast2go	heat shock 70 kda mitochondrial-like	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	response to virus	GO:0009615	Biological Process	90%
Blast2go	response to salt stress	GO:0009651	Biological Process	90%
Blast2go	response to heat	GO:0009408	Biological Process	90%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	90%
Blast2go	ATP binding	GO:0005524	Molecular Function	90%
Blast2go	cell wall	GO:0005618	Cellular Component	90%
Blast2go	mitochondrion	GO:0005739	Cellular Component	90%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	90%
Blast2go	chloroplast	GO:0009507	Cellular Component	90%

Source	InterPros	Term	Type	Identity
Sma3	Chaperone DnaK	IPR012725	-	-
Sma3	Heat shock protein 70, conserved site	IPR018181	-	-
Sma3	Heat shock protein Hsp70	IPR001023	-	-
Sma3	Heat shock protein 70	IPR013126	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q01899

Fln msg:

Fln protein: MALGSLLVSRLARSQSKGIASNVVQSAYLATQNIKSSNFGSPLIQRWGNAARAFSSKGAGNDVIGIDLGTTNSCVALMEGKNPKVIENSEGARTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTVFGTKRLIGRRFDDPQTQKEMKMVPYKIVKATNGDAWVEVNGNQYSPSQIGAFILTKMKETAEAYLGRSVSNAVITVPAYFNDAQRQATKDAGKIAGLDVKRIINEPTAAALSYGMNNKEGLVAVFDLGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNTLLDYLVSEFKKSEGIDLSKDRLALQRLREAAEKAKVELSSSSQTDVNLPFITADASGAKHLNITLTRSKFENLVNHLIERTRDPCKNCLKDAGVSIKEVDEVLLVGGMTRVPKVQEIVSEIFGKQPSKGVNPDEAVAMGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGVFTRLINRNTTIPTKKSQVFSTAADGQTQVGVRVLQGEREMASDNKLLGEFELVGIPPAPRGVPQIEVTFDIDANGIVTVSAKDKATNKEQNITIRSSGGLTEDEIQKMVREAEMHAQKDQEKKALIDARNAADSTIYSVEKSLSEYKDKLSSDVISEIESAVTDLKKAMANDDVEDIKAKTDAATAASLKIGQSVQQQSGGSSSGSQGGSQGGDQAPEAEYEEVKK*

Protein Length: 688

Fln nts: ATGGGGGGTCGAGGCGAAGAGGGTTTTAGTGAGGGTTTTAGGGCCTGAGAGGAGCCGATAAAGCGACCGTAGCGCGTCAGAGGGATTTTCTAAACAGACGTCCGATCTAGCTTGCTGCATGATTTTTAAAGTTTAGGTCTTTTGAAGCTCCTGATCAGTTCGGAAGAAGGAGAAAGCG_-_ATGGCTTTAGGTTCGCTATTGGTGTCCAGGCTTGCAAGGTCTCAGTCGAAGGGTATCGCTTCAAATGTTGTTCAATCTGCATATCTGGCTACACAGAATATTAAATCTTCAAACTTTGGTTCGCCACTGATACAGAGATGGGGAAATGCAGCCAGAGCTTTCAGCTCAAAGGGAGCTGGTAATGATGTGATTGGTATTGATTTGGGAACAACAAATTCATGTGTTGCTCTCATGGAAGGCAAGAACCCCAAAGTCATTGAAAACTCAGAAGGTGCACGGACAACCCCATCTGTTGTTGCTTTTAATCAAAAGGGAGAGCTTCTTGTAGGCACTCCTGCTAAGCGACAAGCTGTGACAAATCCAACAAACACAGTGTTTGGAACAAAGCGTTTGATAGGAAGGCGATTTGATGACCCACAGACGCAGAAAGAGATGAAGATGGTCCCATACAAAATTGTTAAGGCAACCAATGGTGATGCCTGGGTTGAAGTAAATGGGAACCAGTATTCGCCGAGTCAGATTGGAGCATTCATCTTGACAAAGATGAAAGAAACAGCTGAAGCTTATCTAGGGAGGTCTGTATCAAATGCAGTCATTACAGTGCCGGCCTATTTCAATGATGCTCAGCGTCAAGCAACTAAAGATGCTGGAAAAATTGCTGGTTTAGATGTGAAAAGAATTATCAATGAACCAACAGCAGCTGCCCTTTCATATGGTATGAATAACAAGGAAGGTTTGGTTGCTGTTTTTGATCTCGGCGGTGGAACTTTTGATGTTTCAATACTTGAAATATCTAATGGTGTTTTTGAGGTGAAAGCCACAAATGGTGATACCTTCTTGGGTGGTGAGGATTTTGATAACACTTTACTTGACTATCTTGTTTCGGAGTTCAAAAAATCAGAAGGCATCGACTTGTCTAAAGATAGGTTGGCCTTGCAAAGGTTGAGAGAGGCTGCAGAGAAGGCGAAGGTGGAATTGTCATCTTCTTCGCAGACTGATGTTAATCTGCCATTTATCACAGCAGATGCATCTGGGGCCAAGCATTTGAATATCACTTTAACTCGATCAAAGTTTGAAAATTTGGTTAATCACTTAATTGAGAGAACCAGAGATCCTTGCAAGAATTGCTTGAAAGATGCGGGGGTCTCAATAAAGGAAGTGGATGAAGTGCTTCTTGTAGGAGGTATGACTCGAGTGCCTAAGGTTCAAGAAATTGTATCAGAGATCTTTGGTAAGCAACCAAGTAAAGGTGTGAACCCTGATGAGGCTGTTGCCATGGGTGCTGCCATTCAGGGTGGTATACTTCGTGGTGATGTGAAAGAGTTACTTCTTCTTGATGTTACTCCTCTGTCATTGGGAATTGAAACTCTTGGTGGTGTATTTACACGGCTTATCAACAGAAACACCACAATTCCAACAAAGAAAAGTCAGGTGTTTTCAACTGCTGCAGATGGTCAAACTCAGGTAGGAGTGAGAGTATTGCAAGGTGAGCGTGAAATGGCTTCAGATAATAAGCTGCTTGGTGAGTTCGAGCTTGTTGGCATTCCACCAGCACCCAGAGGTGTACCTCAAATAGAGGTTACCTTCGACATTGATGCAAATGGTATTGTGACTGTATCTGCTAAAGACAAAGCCACGAACAAGGAACAGAATATCACTATCCGGTCGTCTGGAGGACTGACAGAAGACGAGATACAGAAAATGGTGAGAGAGGCTGAGATGCATGCTCAAAAAGATCAGGAAAAGAAGGCATTAATCGATGCTAGAAATGCTGCAGACAGCACGATATACTCAGTAGAGAAGAGTTTGAGCGAATATAAAGACAAACTTTCTTCAGATGTCATTTCTGAAATAGAGTCAGCTGTAACAGACTTAAAGAAAGCAATGGCTAATGATGATGTTGAAGATATCAAAGCAAAAACTGATGCAGCAACTGCAGCATCCTTGAAAATAGGCCAGAGTGTGCAGCAACAATCTGGTGGCTCATCCTCTGGTTCTCAAGGTGGATCTCAAGGCGGAGACCAGGCACCAGAGGCTGAATATGAAGAGGTCAAGAAGTGA___TTTAGGCAATTGAGGTCGAATCTGAGGTTATCTAGGAGATGCTAGGTACAAAATTACTAGTTTGAAAATTCAAAACTGTTATAAGCAAATATTTAGAGATGCCTAAATGCAGCCATTTTTGTTCTGAGCAAGAAATATATTTTTCATGTTATGACTGTTGACACTGAAGAGGAGAAATCTGTAGTTATCATATTGAACTCTACAAAATTCTT

Fln Alignment:

Contig5314___NVVQSAYLATQNIKSSNFGSPLIQRWGNAARAFSSKGAGNDVIGIDLGTTNSCVALMEGKNPKVIENSEGARTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTVFGTKRLIGRRFDDPQTQKEMKMVPYKIVKATNGDAWVEVNGNQYSPSQIGAFILTKMKETAEAYLGRSVSNAVITVPAYFNDAQRQATKDAGKIAGLDVKRIINEPTAAALSYGMNNKEGLVAVFDLGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNTLLDYLVSEFKKSEGIDLSKDRLALQRLREAAEKAKVELSSSSQTDVNLPFITADASGAKHLNITLTRSKFENLVNHLIERTRDPCKNCLKDAGVSIKEVDEVLLVGGMTRVPKVQEIVSEIFGKQPSKGVNPDEAVAMGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGVFTRLINRNTTIPTKKSQVFSTAADGQTQVGVRVLQGEREMASDNKLLGEFELVGIPPAPRGVPQIEVTFDIDANGIVTVSAKDKATNKEQNITIRSSGGLTEDEIQKMVREAEMHAQKDQEKKALIDARNAADSTIYSVEKSLSEYKDKLSSDVISEIESAVTDLKKAMANDDVEXXXXXXXXXXXXSLKIXXXXXXXXXXXXXXXXXXXXXXXXAPEAEYEEVKK
Q01899_________________DVASATFSAYRSLTGSTKPAYVAQKWSCLARPFSSRPAGNDVIGIDLGTTNSCVSVMEGKNPKVIENSEGARTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTVFGTKRLIGRRFDDPQTQKEMKMVPFKIVKAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAEAYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNALLDFLVNEFKRTESIDLSKDRLALQRLREAAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFEALVNHLIERTKAPCKSCLKDANVSIKDVDEVLLVGGMTRVPKVQEVVLNIFGKSPSKGVNPDEAVAMGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKMLGEFDLVGIPPAPRGLPQIEVTFDIDANGIVTVSAKDKSTGKEQQITIRSSGGLSEDEIEKMVKEAELHAQKDQERKTLIDIRNSADTTIYSIEKSLGEYREKIPSETAKEIEDAVSDLRKAMSGDNVDEIKSKLDAANKAVSKI-GEHMSGGSSGGSSAGGSQGGGDQAPEAEYEEVKK

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
1395	11		88		0.923564
1397	88		11		0.923564
1398			11	88	0.923564
1399		88	11		0.923564
1670	20		80		0.999996
1876	88			11	0.923564
1924	85	14			0.993533
2018		11		88	0.923564
2168		80	20		0.999996
2339			66	33	0.997452
2340	66			33	0.997452
2342			33	66	0.997452
2344		33	66		0.997452
2345		66		33	0.997452
2347	33			66	0.997452
2356		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain