SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5304

Length: 1329 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene5304

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22299	2/58
SustainPine v2.0	sp_v2.0_unigene23628	54/58
SustainPine v2.0	sp_v2.0_unigene31091	1/58
SustainPine v2.0	sp_v2.0_unigene80538	1/58

Source	Descriptions	Term	Type	Identity
AutoFact	Eukaryotic translation initiation factor 6-2 n=8 Tax=Magnoliophyta RepID=IF62_ARATH	-	-	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	eukaryotic translation initiation factor 6	-	-	94%

Source	GOs	Term	Type	Identity
Blast2go	cellular response to abscisic acid stimulus	GO:0071215	Biological Process	94%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	94%
Blast2go	cytosol	GO:0005829	Cellular Component	94%
Blast2go	nucleolus	GO:0005730	Cellular Component	94%

Source	InterPros	Term	Type	e value	Identity
Sma3	Translation initiation factor IF6	IPR002769	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NK83

Fln msg:

Fln protein: MATRTQFENSSEIGVFSKLTNGYCLVAIGGSENFYSTFEAELADVIPVVKTSIGGTRIVGRLCAGNKNGLLLPNTTTDQELQHLRNSLPDEVVVQRVEERLSALGNCVVCNDHVALIHTDLDRETEELIADVLGVEVFRQTIAGNILVGSYSVFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGMIVNDWTAFCGLDTTATELSVIESVFKLRESQPSAIVDEMRKSLIDTFV*

Protein Length: 247

Fln nts: CTCGATTATATGAGAGTCCTCTCTTACCGATTAACATGGGGAGTGTGATATACATCTATTGGCTTGGGTACGGAAGTCTACTTTACTCTGAAATTTCGATCCCCGGATCAAGTGCGATTACGTCTATTGGCTTGGGAGCCGAAGGCTACACTACTCTGAAATTTCGAACCCCGGATCAGGCCGAATTTGCCAGGACGAACATCACTTTAAGCTTGCAGCAATACGCACTGCTATCTACTTACGGCTGTAAGCTCAAAGCTATAATACTCTGTGGAGTAAATCATCTCTTTGGCTGTGCATC_-_ATGGCTACCAGAACTCAGTTTGAAAATTCCAGTGAGATTGGTGTTTTTTCAAAACTTACTAATGGATATTGCCTGGTGGCCATTGGAGGATCAGAGAACTTTTACAGCACATTTGAGGCAGAGCTGGCAGATGTTATTCCTGTTGTGAAGACATCTATAGGAGGCACCAGGATTGTTGGCCGTCTTTGTGCTGGGAACAAAAATGGTCTTTTGCTGCCAAATACAACTACCGACCAAGAGCTTCAACACTTGAGGAATAGTTTGCCTGATGAAGTTGTGGTGCAACGTGTTGAAGAACGACTATCTGCGCTTGGCAATTGTGTGGTGTGCAATGATCATGTTGCTCTCATTCATACCGACCTGGACAGGGAGACAGAAGAATTAATAGCAGACGTTCTGGGAGTTGAAGTTTTCAGGCAAACTATTGCGGGAAATATTCTTGTTGGGAGTTATAGCGTTTTCTCCAATAGGGGTGGTCTGGTCCATCCACACACTTCAATAGAAGATCTGGATGAATTATCAACTCTTCTTCAAGTGCCTCTTGTGGCAGGCACTGTCAATCGTGGAAGTGAAGTAATAGGCGCTGGAATGATTGTAAATGATTGGACAGCTTTTTGTGGTCTGGACACAACTGCAACTGAATTGTCTGTTATCGAAAGTGTTTTCAAGTTGAGAGAATCACAACCTAGTGCTATCGTTGATGAGATGAGAAAGTCATTGATAGATACTTTTGTCTGA___GTATCAATGGCATGTGTTATGTCTCATCGCTTGTTAGTTAAACTTACTATCAGGCGTGTCTAAAATTTCAATGGATAATCTTGTCATTTTGCGAAATTGCTGTGAAAGTTCATGCTTTACACAGTTGTGAGACAACATTGTTACAACTAGCAATTGCCCCAAAAGGTGCACAGACTTAACAATTGCCCCAAAAGGTGCAAAGACATGTAAATAGGATGGTTAAATTGCAAAAACTATAACTTTGATTTTGATTTCTGTAATTAAGCTGATATATTTTGTAGATAATTGTA

Fln Alignment:

Contig5304___MATRTQFENSSEIGVFSKLTNGYCLVAIGGSENFYSTFEAELADVIPVVKTSIGGTRIVGRLCAGNKNGLLLPNTTTDQELQHLRNSLPDEVVVQRVEERLSALGNCVVCNDHVALIHTDLDRETEELIADVLGVEVFRQTIAGNILVGSYSVFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGMIVNDWTAFCGLDTTATELSVIESVFKLRESQPSAIVDEMRKSLIDTFV
A9NK83_________________MATRTQFENSSEVGVFSKLTNAYCLVAIGGSENFYSTFEAELADVIPVVKTSIAGTRIIGRLCAGNKNGLLLPNTTTDEELQHLRNSLPDEVVVQRVEERLSALGNCVVCNDHVALIHTDLDRETEELIANVLGVEVFRQTIAGNILVGSYCMFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGMIVNDWTAFCGLDTTATELSVIESVFKLRESQPSAIVDEMKKSLIDTFV

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
618	80		20		0.995493
633	80		20		0.995493
644	20			80	0.995493
673	80			20	0.995493
740		16		83	0.994512
778	11		88		0.923564
780		88	11		0.923564
781			11	88	0.923564
815		11		88	0.923564
1051		86		13	0.999973
1066	87		12		0.999964

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain