SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5299

Length: 1465 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene5299 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15731	79/81

Source	Descriptions	Term	Type	Identity
AutoFact	Thiazole biosynthetic enzyme n=9 Tax=Pinaceae RepID=Q3V7W7_PSEMZ	-	-	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	thiazole biosynthetic enzyme	-	-	93%

Source	InterPros	Term	Type	e value	Identity
Sma3	Thiamine biosynthesis Thi4 protein	IPR002922	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRW5

Fln msg:

Fln protein: MASVTAASASARTLVSGSIFEDRKLMSSKFGSWSSSVHGTAFPASVRHSAAAAARATPPITALYADQKYDLQSFKFEPIRESIVAREMTRRYMMDMITHADTDVVIVGAGSAGLSCAYELSKNPDVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDEIGVPYDEAEDYVVIKHAALFTSTIMSQVLARPNVKLFNAVAAEDLIIKEGRVSGVVTNWALVSMNHDTQSCMDPNVMESKVVVSSCGHDGPFGATGVKRLKSVGMIDKVPGMKALDMNAAEDAIVRLTREIVPGMIVTGMEVAEIDGSPRMGPTFGAMMVSGQKAAHLALKALGQPNALDGTLRVHPELVLASAEDEITTASA*

Protein Length: 368

Fln nts: ATGGGGGCCTAGCATTGCTTCACTCCTCCATTTTCTGAAGCGAGAAGAAGAAAA_-_ATGGCGTCTGTTACAGCAGCCTCTGCCTCTGCTCGCACCTTGGTCTCGGGTTCGATCTTCGAGGACCGCAAATTGATGTCCTCCAAGTTCGGTTCCTGGTCATCATCCGTCCATGGCACCGCCTTCCCGGCCTCTGTGCGCCACTCGGCGGCGGCGGCGGCGCGAGCGACGCCTCCGATCACTGCTCTGTACGCGGACCAGAAATATGACCTGCAGAGCTTCAAGTTCGAGCCCATCAGGGAATCCATCGTGGCTCGGGAGATGACCCGGCGCTACATGATGGACATGATCACGCATGCCGACACCGACGTGGTGATCGTCGGCGCGGGCTCCGCTGGGCTCTCTTGCGCCTACGAGCTCAGCAAGAACCCGGACGTGAAGGTTGCTATCATCGAGCAATCGGTGAGCCCCGGTGGCGGGGCGTGGCTCGGAGGTCAGCTGTTCTCCGCCATGGTGGTGAGGAAGCCCGCTCACCTCTTCCTAGACGAGATCGGTGTCCCCTACGACGAGGCTGAGGACTACGTGGTCATCAAGCACGCAGCGTTGTTCACCTCGACCATCATGAGCCAGGTGCTCGCCAGGCCCAATGTGAAGCTCTTCAACGCTGTGGCCGCTGAGGATCTCATCATAAAGGAGGGGCGGGTGTCCGGCGTCGTGACCAACTGGGCCCTGGTGTCCATGAACCACGATACACAGTCGTGCATGGACCCCAACGTTATGGAGTCCAAGGTCGTGGTCAGCTCCTGTGGCCACGATGGGCCATTTGGTGCCACCGGTGTCAAGAGGCTCAAGAGCGTCGGCATGATCGACAAGGTGCCCGGCATGAAGGCCCTCGACATGAATGCGGCCGAGGACGCCATTGTTCGGCTCACCAGGGAGATTGTGCCCGGCATGATCGTTACTGGCATGGAGGTCGCCGAAATCGATGGCTCCCCTAGAATGGGGCCAACCTTTGGAGCGATGATGGTTTCAGGGCAGAAGGCAGCACATCTGGCACTCAAAGCCCTTGGGCAGCCCAATGCATTGGATGGCACATTGAGGGTTCATCCTGAACTTGTTTTGGCATCAGCTGAAGATGAGATCACCACTGCATCTGCTTAG___ATCATCTTCTCCTCCTACTTTATATTATATCATATGTACCTAACTATGTCATCAGTTTGGCTTACTCTGCTACAGACTAGCTTTTGTATAAATGTTGTGAAATTTTTCCATGTAATAGCGTTCTCCTTATCTTGCTGTAATAAAGTTGTAGGCGTTTCAATGTTACAAAGTTTACTGTATTCTCTTCTTTGGTTGGGTTCTTTGCCCCGTTTCCTATATTGGATGTTCACATTGTATTTTATTTAGAGCATGTATTTTTAGCATAACAATGGCATTTGGATAAGTAATGAATGTAAGTTGAAGATGAACC

Fln Alignment:

Contig5299___GSIFEDRKLMSSKFGSWSSS---VHGTXXXXXXXXXXXXXXXXXXXXXALYADQKYDLQSFKFEPIRESIVAREMTRRYMMDMITHADTDVVIVGAGSAGLSCAYELSKNPDVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDEIGVPYDEAEDYVVIKHAALFTSTIMSQVLARPNVKLFNAVAAEDLIIKEGRVSGVVTNWALVSMNHDTQSCMDPNVMESKVVVSSCGHDGPFGATGVKRLKSVGMIDKVPGMKALDMNAAEDAIVRLTREIVPGMIVTGMEVAEIDGSPRMGPTFGAMMVSGQKAAHLALKALGQPNALDGTLRVHPELVLASAEDEITTASA
A9NRW5_________________GSILEERKLMSSKFGSLSSSCSSVHGTALQASARPSVAAVRATPAIAS-LYADRKYDLESFKFEPIRESIVAREMTRRYMMDMITHADTDVVIVGAGSAGLSCAYELSKNPDIKVAIVEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDEIGVPYDEAEDYVVIKHAALFTSTIMSKVLARPNVKLFNAVAAEDLIIKEGRVSGVVTNWALVSMNHNTQSCMDPNVMESKVVVSSCGHDGPFGATGVKRLKSVGMIDKVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGSPRMGPTFGAMMVSGQKAAHLALKALGQPNALDGTLTVHPELVLASAEDEITTASA

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
615		5	94		0.998397
694	93	6			0.99903
695		6		93	0.99903
720		7		92	0.999664
801	20		80		1.0
925		10		90	0.90298
927		10	90		0.90298
1454		20	80		0.995493
1456		20		80	0.995493
1459			80	20	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
1250	1266	CGC CGC CGC CGC CGC CG	17

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain