SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5298

Length: 1063 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene5298 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7818	78/80

Source	Descriptions	Term	Type	Identity
AutoFact	Proteasome subunit alpha type n=1 Tax=Picea sitchensis RepID=A9NKR6_PICSI	-	-	94%
FL-Next	sp=Proteasome subunit alpha type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	proteasome subunit alpha	-	-	92%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Threonine endopeptidases.	EC:3.4.25.-	-	0.0	92%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	92%
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	92%
Blast2go	threonine-type endopeptidase activity	GO:0004298	Molecular Function	92%
Blast2go	cytosolic ribosome	GO:0022626	Cellular Component	92%
Blast2go	vacuole	GO:0005773	Cellular Component	92%
Blast2go	proteasome core complex, alpha-subunit complex	GO:0019773	Cellular Component	92%
Blast2go	nucleus	GO:0005634	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	-
Sma3	Proteasome, alpha-subunit, N-terminal domain	IPR000426	-	-
Sma3	Proteasome, beta-type subunit, conserved site	IPR016050	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKR6

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 28 aas, your sequence is shorter than subject: 223 - 250

Fln protein: MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGAAVGILAKDGVILAGEKRVTSKLLQTSKSTEKMYKVDDHVACAVAGIMADANILINTARVQAQRYTFAYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLCMSDPSGNYGGWKAAGIGANNPVAQTMLRQEYKDDMTREEAAELALRVISKSMETTAISPEKLELAELFCCLLEK*

Protein Length: 224

Fln nts: TAGAAAGTGCAACCCTTACCTTGCGGAACATGGGACCTTAACATTTTTTCCTTTGAAGCGACGAGCAGAGGTGGAAGCTCTGCTGATTGTTTGTAGCATCTGATCATCAGAACGAGTTCGAGTAAAACCCTAAAGTTTCCTGTTCAAA_-_ATGTCTCGGCGATACGATAGTAGGACTACGATCTTCTCTCCCGAAGGTCGGTTATACCAGGTTGAATATGCCATGGAAGCTATTGGCAATGCTGGAGCAGCCGTTGGAATTTTGGCAAAAGACGGGGTTATACTGGCTGGGGAGAAACGGGTTACTTCCAAGCTTCTTCAGACCTCCAAATCGACAGAGAAAATGTACAAGGTCGATGATCACGTTGCCTGTGCGGTCGCTGGAATCATGGCAGACGCAAACATTTTGATTAACACTGCCAGAGTTCAGGCACAGAGGTACACCTTTGCGTACCAAGAGCCCATACCTGTTGAACAGTTGGTTCAATCCCTCTGTGATACAAAGCAAGGGTACACGCAATTTGGAGGGCTTCGGCCCTTTGGTGTTTCCTTTCTGTTTGCAGGCTGGGATAAGAATTATGGTTTCCAGCTTTGTATGAGTGACCCGAGTGGAAATTATGGAGGATGGAAGGCTGCAGGGATTGGTGCAAACAATCCAGTTGCGCAGACTATGTTGAGACAGGAATACAAGGATGATATGACTAGAGAGGAGGCTGCTGAGCTTGCACTGAGGGTGATCAGCAAGAGCATGGAGACGACTGCTATCTCTCCCGAGAAGTTGGAACTAGCGGAGCTTTTTTGTTGCCTTCTGGAGAAGTGA___AGTACCAGGTTTACTCGCCCGAATCTCTGTCTAAGCTACTAGAGAAATTGAATCTCGCTCAGCCCGCAGCAGAGGCTTCTTAATTTAATTTGGAAATGCATTCTAGAATGCCATGCTTGAGCTTATTGCTGTGAAGCACAATAGATGCTGGAATATGTGGACCTGCCTAAACTGCTGAAGCTATAATGTTTAATGAACATGGTTGCTTTATTTTCATTCCATATGCTAAAGTGTAATTTTCCTTCG

Fln Alignment:

Contig5298___MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGAAVGILAKDGVILAGEKRVTSKLLQTSKSTEKMYKVDDHVACAVAGIMADANILINTARVQAQRYTFAYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLCMSDPSGNYGGWKAAGIGANNPVAQTMLRQEYKDDMTREEAAELALRVISKSMETTAISP
A9NKR6_________________MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGAAVGILAKDGVILAGEKRITSKLLQTSKSTEKMYKVDDHVACAVAGIMADANILINTARVQAQRYTFAYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLCMSDPSGNYGGWKAAGIGANNPVAQTMLRQEYKDDMTKEEAAELALKVISKSMETTAISP

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
978	85			14	0.993533
1008		57		42	1.0
1015	83	16			0.994512
1016	83	16			0.994512
1017	16	16	66		0.988813
1018		20	80		0.995493
1020	80			20	0.995493
1038	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain