SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5287

Length: 1347 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene5287

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8034	86/88

Source	Descriptions	Term	Type	Identity
AutoFact	Type II chlorophyll a /b-binding protein n=3 Tax=Pinaceae RepID=Q02070_PINSY	-	-	96%
FL-Next	tr=Putative chlorophyll A-B binding protein of LHCI type II; Picea abies (Norway spruce) (Picea excelsa).	-	-	96%
Blast2go	chlorophyll a-b binding protein	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	photosynthesis, light harvesting	GO:0009765	Biological Process	90%
Blast2go	protein-chromophore linkage	GO:0018298	Biological Process	90%
Blast2go	metal ion binding	GO:0046872	Molecular Function	90%
Blast2go	chlorophyll binding	GO:0016168	Molecular Function	90%
Blast2go	photosystem II	GO:0009523	Cellular Component	90%
Blast2go	integral to membrane	GO:0016021	Cellular Component	90%
Blast2go	photosystem I	GO:0009522	Cellular Component	90%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	90%

Source	InterPros	Term	Type	e value	Identity
Sma3	Chlorophyll A-B binding protein, plant	IPR001344	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q8VXA6

Fln msg:

Fln protein: MASGAAVVCASSSVAAAVVVAPSSSSQKTILANNVGAAKASFLVGRAVSLRQSKAAMPRRAAVIVSEAAQTERPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPETLKWMVQSELVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDKTTLFVVEMIFLGWAEGRRWADILKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPIDNLLAHLADPGHATVFAAFSSK*

Protein Length: 280

Fln nts: TATTGGGGGCTTGCATTGAGTGGTGCTGGGAGAACCATACTTGATTTTTGTACATTATGGACCAAATCAAAAACTCTCCTGTTATCCTCGAGATAAGGCTGCTACCACAGTATTTTTCTCTGGACATCTTCATTATCTTGGCATGCATGAAGTTGTGAGGTACGCTGCTACACATACATAGAGTGGACTTCTTTGAAAGAAAGAGGGTCTGCAGTCGATC_-_ATGGCATCTGGTGCCGCTGTTGTCTGTGCATCTTCCAGTGTTGCAGCAGCTGTGGTTGTTGCTCCTTCATCCAGCTCCCAGAAGACTATACTTGCCAACAATGTGGGAGCAGCCAAGGCTTCCTTCTTGGTAGGCAGGGCTGTGAGTCTGAGACAGTCCAAAGCTGCCATGCCCAGGAGAGCAGCTGTGATTGTCTCTGAAGCAGCACAAACAGAGAGGCCTCTGTGGTTTCCTGGCAGTACTCCCCCACCCTGGCTTGATGGCAGTCTTCCAGGAGACTTCGGGTTCGATCCACTCGGACTAGGGTCAGACCCTGAGACCCTCAAATGGATGGTACAGTCTGAGCTAGTTCATTGCAGATGGGCAATGCTGGGGGCAGCTGGAATCTTCATTCCAGAGCTGTTGACTAAGTTGGGGATCCTCAACACCCCTTCCTGGTACACTGCAGGAGAGCTGGAGTATTTCACAGATAAAACAACTCTCTTCGTGGTGGAGATGATATTCCTTGGATGGGCCGAGGGCCGCAGATGGGCAGATATACTTAAGCCCGGCTCAGTCAACACCGATCCAATCTTCCCCAACAACAAGCTGACTGGAACTGATGTTGGGTACCCTGGTGGGTTGTGGTTTGACCCTCTTGGCTGGGGCTCTGGCTCTCCTGCAAAAATCAAGGAGCTGAGGACCAAGGAAATCAAGAATGGACGATTGGCCATGTTGGCTGTCATGGGAGCTTGGTTCCAAGCAGAGTACACTGGCACTGGTCCTATTGACAACTTATTGGCTCACCTTGCAGACCCTGGACATGCCACTGTATTTGCGGCCTTCTCATCAAAATGA___ACTGACGTGGCTTCTGGAATTCCATCTGTAACATGATTTCATCTGAAACTCCTTGGGAAAAATTATGTGTATAGCTCCCCAAAGACTAATGTTAAAAGAGCATCACTGTTATTTGTCTGTTATTTTAAAGCTATTTGTGTGGAGAATATTTGTGCTTTGTGTGTGTTAGTATGATGTAAATGTAGTTTTCTGAAGTTGGATTTTGTCTTGTAAGATTCTGGCTACAAAGTTCAGTTAATGAATAGAATGGGGAACATGCTGGAGAAGGGCAAAACAATGATGAATACAAT

Fln Alignment:

Contig5287___QKTILANNVGAAKASFLVGRAVSLRQSKAAMPRRAAVIVSEAAQTERPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPETLKWMVQSELVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDKTTLFVVEMIFLGWAEGRRWADILKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPIDNLLAHLADPGHATVFAAFSSK
Q8VXA6_________________QKTVFANNVGAAKASFLVGRAVSLRQSKAAMPRRAAVIVSEAVQTERPLWFPGTTPPPWLDGSLPADFGFDPLGLGSDPETLKWNVQSELVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDKTTLFVVEMIFLGWAEGRRWADIIKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPIDNLLAHLADPGHATVFAAFSSK

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1049		90		10	0.90298
1105	85		14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain