SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5265

Length: 1563 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene5265

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16496	106/112
SustainPine v2.0	sp_v2.0_unigene18286	3/112
SustainPine v2.0	sp_v2.0_unigene33376	1/112
SustainPine v2.0	sp_v2.0_unigene61659	1/112

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA-binding protein [Medicago truncatula]	-	-	2.0e-33	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	protein	-	-	0.0	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	-
Sma3	RNA recognition motif domain	IPR000504	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNP8

Fln msg:

Fln protein: MADAYWRDGRSLGIPAPAKRARGDLPPAGISGGRDISGYLPDVAGRPFLRESNGPGSLDSHVRNGLSYSGGGLTSGDIGGLGGSLGTRLGGSGGYGGLSGSSLPDSVLMGQRSGIGSADPGLGGKLGSLGLGYQRSEPQGLREPLRRPDEHLPSDASNTLFVEGLPADCTRREAAHIFRPFIGFKEVRLVQKEARRPGGDPLVLCFVDFSDARCAATALEALQGYKFDQTDRESSGLKLQFARFPGPRGPSGSARDEPYRGNRDRDDSRGRFRR*

Protein Length: 276

Fln nts: ATGGGAGTAAACCAAGTACTACACCAACGAAGAGATGCGGTGGAAAAAGCTATAGAAGCCAACGCGGCGCTATGGGAAGCTCACTTCGAAAGCTTCTCTACATCTTCTGCTCAAACGGTTTCCGATTTTACATATTCTCTCGATTGGAGGATTTAGAGTTTCTCTGTGTCCTCAGCTGACCATTATCTGGTTTCTATTTTGGGTCATTCTTCAAAGATTTCAGCCGTGGTTGCAGTTTGCTGCGTGTTTGAAGGAACTCA_-_ATGGCGGACGCTTACTGGAGAGATGGCCGCTCATTAGGGATTCCAGCTCCGGCCAAGCGCGCTCGTGGTGATCTCCCACCAGCAGGGATTTCTGGCGGTCGTGATATTTCTGGTTATTTACCTGATGTGGCGGGTCGACCATTTCTACGGGAATCCAACGGCCCTGGATCTCTGGATTCTCACGTTCGAAATGGGCTTTCATATTCTGGTGGGGGTTTAACATCTGGTGACATTGGTGGTTTGGGAGGCTCCCTTGGGACAAGGTTGGGAGGCAGTGGAGGTTATGGAGGATTGTCAGGTTCGTCCCTTCCTGACTCTGTTTTAATGGGTCAGAGGTCAGGCATTGGAAGTGCAGATCCTGGACTCGGGGGGAAGTTAGGGAGCCTAGGTTTGGGCTATCAAAGGTCAGAGCCGCAGGGATTGAGAGAACCTTTGAGAAGGCCTGATGAGCACCTTCCATCTGACGCGTCAAATACCCTCTTTGTTGAGGGTCTTCCTGCTGATTGCACTCGCAGGGAAGCTGCACACATTTTCCGTCCATTCATTGGTTTCAAAGAAGTTCGACTGGTACAAAAGGAGGCTCGACGTCCTGGTGGAGACCCTCTTGTGTTATGTTTTGTTGATTTTTCCGATGCAAGATGTGCTGCAACTGCGTTAGAAGCGTTACAAGGGTATAAGTTTGATCAAACTGACCGTGAGTCATCCGGTCTAAAATTGCAATTTGCACGTTTTCCTGGTCCACGTGGGCCATCTGGTTCTGCTCGAGATGAACCTTATCGTGGAAATCGTGATCGTGACGACTCTCGTGGTCGCTTTCGACGTTGA___TATTACAGTCAAACAGGTACATGCGCTTTTGCAGAAAGATTCGCTGGTTGATCGAGCTAGTTTTGAAGGAGCGAATGCGGGAATCAAGTATCAGTATGTGGTGTTGTCGGTATTAGTTTAATGCGGGATGTATTTTGGCCTAATTAGAACCAAAGTGGCTAGTGCGTAACGCCGGAACTGTTTAAAGTTAAGGATTCCAGTATTATGGAACATCATTTGGTCGTTTTGACTATATGGATTCTCCTGCAGTAGTAATTTAACTTTTGGACTATAAGAATATTCACAGAAGTGACAATTAATATTACCTGGTACAAGCGATCTGCGTTTCTTTATCGCGGTTTTCCGTAATTCTCGATAGACTTTTAATCTGTGCAAGGGTTTATTTATTATTACTCAGATTTATTATACATGGTACAGTCGATCGTTGTTTTTTAATTTTCGCGGCACGAATGAGATGGGTTTCTATTCATGCTTTGCG

Fln Alignment:

Contig5265___MADAYWRDGRSLGIPAPAKRARGDLPPAGISGGRDISGYLPDVAGRPFLRESNGPGSLDSHVRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDSVLMGQRSGIGSADPXXXXXXXXXXXXYQRSEPQGLREPLRRPDEHLPSDASNTLFVEGLPADCTRREAAHIFRPFIGFKEVRLVQKEARRPGGDPLVLCFVDFSDARCAATALEALQGYKFDQTDRESSGLKLQFARFPGPRGPSGSARDEP
A9NNP8_________________MADAYWRDGRSLGIPTPAKRARGDLPPAGISGGRDIPGYLPDMAGRSFMRESNPPGSLDSHARNGLPYSAGGLSSADIGGLGGSLGTRLGGSGGYGGLSGSSLADSVLMGQRPGIGNADPGYGGKLGSLGLGYQRSDAQGLRDPLRRPDEHLPPDASNTLFVEGLPADCTRREAAHIFRPFIGFKEVRLVQKEPRRPGGDPLVLCFVDFTDARCAATALEALQGYKFDETDRESTGLRLQFARFPGPRGPSGSARDEP

SNPs (tot: 4)

Position	A %	C %	T %	Probability
786		25	75	0.996473
864		87	12	0.992554
1420	20		20	0.99255
1421	20	40	40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain