SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5262

Length: 1312 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene5262

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15703	3/87
SustainPine v2.0	sp_v2.0_unigene27287	83/87

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[K] COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains	-	-	3.0e-13	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	brown planthopper-induced resistance protein 1	-	-	0.0	74%

Source	InterPros	Term	Type	e value	Identity
Sma3	Cystathionine beta-synthase, core	IPR000644	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P0P2

Fln msg:

Fln protein: MSTAAGIVQGSNLVASHLGRAPEWRLKNGEVVNCRSAFLGKSTFLTSGFRLSAEMRGERKSSSSSSASVVVLASGDAAEVQVETPEEVLSGEWPGNFSMLNYEDLSTYLEPMIFKEEAQPSAFLGDVMSKTIRTATAEQLLEEIDYHFASISGLPVTDEALKCIGVISKKDIAKAPKGLKSTVGEVMSSPAIILSAEKTVLDAAVLMLKNKIHRIPIVNDGGQVVGIVTRTDIFNALEGLPN*

Protein Length: 244

Fln nts: ATGGGGACGGATGGGGAGTTTCAGTTGTTTTTGGTATTCCAACTCTGAAGAAGAAGCACCTCATCGACGAGAACAGGAACTCAAACTCGAACTCGAAACCTCTAGAACCCGAATAGGTTACAGGGTTGTTTGGCCGGAAAAACGAGTGAGAAGAGTAGTTACCTAGCGTTCGGGATCT_-_ATGTCGACTGCTGCGGGTATCGTCCAGGGTTCGAACCTCGTCGCCTCGCATCTGGGGCGAGCGCCGGAATGGAGGCTAAAGAACGGTGAGGTCGTCAATTGCAGATCTGCTTTCCTCGGAAAATCGACATTTCTGACTTCTGGTTTCCGCTTGTCTGCGGAAATGAGGGGGGAGAGAAAAAGCTCTTCCTCTTCTTCTGCTAGTGTTGTCGTGCTCGCGTCTGGCGACGCTGCTGAAGTACAGGTAGAGACGCCGGAAGAGGTTCTTTCCGGCGAGTGGCCGGGAAACTTCTCCATGCTCAACTATGAAGATCTGTCTACTTACCTGGAGCCAATGATCTTTAAAGAGGAGGCACAACCTTCAGCATTCCTGGGTGATGTGATGTCAAAGACGATCCGGACAGCCACGGCAGAGCAGCTGTTGGAGGAAATCGACTATCATTTTGCCAGTATTTCAGGTCTTCCTGTCACTGACGAGGCTCTCAAGTGCATTGGAGTCATCTCTAAGAAGGACATAGCAAAAGCTCCCAAGGGGCTAAAATCAACAGTTGGTGAAGTCATGAGCTCACCTGCAATAATTTTGTCTGCTGAAAAGACTGTGTTAGATGCCGCTGTTCTGATGCTGAAAAACAAAATCCATCGAATTCCCATTGTAAATGATGGAGGCCAGGTTGTTGGTATCGTCACTCGTACTGATATATTCAATGCACTGGAGGGCCTTCCTAACTGA___ATATGTCCGTTTTTCCATGTATTAACTGAATATGTCCTTTTTCCATGTCAATGGATTGCCATGAATAGCTTTTCTTGAGGTTACCCATAAACCATTTAGGTGTTAATTATTTTATAGTGTAAATAGGGTTTTTTCAAATTTATAGGTGCTTGGTATATAAATAAATAGCCGGATCTTTTAAGTATTTGTAGTGTGTTAACGACTACACAAATTGGATGTCCTTATTCACTTGTGTGGGAATAGTGGCAAGTAGAAGCTTTGTTGTTGCATTTTACACCTTTCTGGTACAAATCAGGGTTAAGCTCCACTTATGGGCATTTTTGTTTCAGTTGAGTATTTATTTCAGTTCTATGAATTCGGTGTAGTACTTCATGTTTGTGGCAATTGAAAAACTGTGTCTTGATT

Fln Alignment:

Contig5262___MSTAAGIVQGSNLVASHLGRAPEWRLKNGEVVNCRSAFLGKSTFLTSGFRLSAEMRGERKXXXXXXXXXXXXXXGDAAEVQVETPEEVLSGEWPGNFSMLNYEDLSTYLEPMIFKEEAQPSAFLGDVMSKTIRTATAEQLLEEIDYHFASISGLPVTDEALKCIGVISKKDIAKAPKGLKSTVGEVMSSPAIILSAEKTVLDAAVLMLKNKIHRIPIVNDGGQVVGIVTRTDIFNALEGLPN
A9P0P2_________________MSTAAGIVQGWNLVASHLGRAPEWGLKNGVIVNCRSAFIGKLTFPSSGLGWSAEVKGKRKSSSSSSASVVVLASGDSADVKVETPEEVLSGEWPGNFSMLNFEDLSSYLEPMIFKEEAQPSAFLGDVMSRTIRTATAEQLLEDIDYHFASISGLPVTDKDLKCIGVISKKDKAKAPKGLKSTVGEVMSSPAITLSAEKTVLDAAVLMLKSKIHRIPIVNDADQVVGIVTRADIFNALEGLPN

SNPs (tot: 4)

Position	A %	C %	T %	Probability
749		11	88	0.923564
1130		84	15	0.999986
1144	10		90	0.90298
1213		16	83	0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain