SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5256

Length: 1575 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene5256

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14536	113/115
SustainPine v2.0	sp_v2.0_unigene62676	2/115

Source	Descriptions	Term	Type	Identity
AutoFact	protein EXORDIUM like 3 [Arabidopsis thaliana] gb\|AAL16255.1\|AF428325_1 AT5g51550/K17N15_10 [Arabidopsis thaliana] dbj\|BAB08671.1\| unnamed protein product [Arabidopsis thaliana] gb\|AED96097.1\| protein EXORDIUM like 3 [Arabidopsis thaliana]	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	at5g51550 k17n15_10	-	-	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	0.0	81%
Blast2go	response to karrikin	GO:0080167	Biological Process	0.0	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	Phosphate-induced protein 1	IPR006766	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NS77

Fln msg:

Fln protein: MGVFACVGLFLFIVLSSVEAWRPWPQYFNQSTTALGLGQQPNKADLQFGTSKKNEGSSPYVNMKYHMGPVLTSAINVHTIWYGRWSKKEKRVINEFLLSISNNTKSPSVGQWWQTVQLYTDQTGANISRNIVITSQHEDYYSHGKVLSRLTVQEVIKNAITAKTSPLPIDPKNGLYLLLTSSDVAVQDFCRAVCGFHYFTFPSIVGYTLPYAWVGHSGKQCPEVCAYPFAVPSYMTGTKAFKAPNGDVGIDGMISVIAHELAELSSNPLINAWYAGEDPTSPTEIADLCEGLYGTGGGGSYTGQVLTDKFGANYNVNGIRRKYLVQWIWSPILNACSGPNALDS*

Protein Length: 346

Fln nts: ACAACAACAGTCACAGGAACACTCTATTCCTCAAGCATTTGAGTATTATATAAAGGGTTTGAATCTCATTGCATGGGATCCATTGCATTGTTGCTGTGTGTTGTTCCAGAAGAAA_-_ATGGGTGTGTTTGCATGTGTGGGTTTGTTTTTATTCATTGTATTATCTTCAGTTGAAGCATGGAGGCCATGGCCTCAATATTTCAATCAGAGTACTACTGCTTTGGGACTGGGACAGCAGCCCAATAAGGCAGATTTGCAGTTTGGGACTTCGAAGAAGAATGAAGGGTCCTCACCATATGTGAATATGAAGTACCACATGGGGCCTGTGCTGACTTCTGCTATCAATGTCCATACAATTTGGTATGGCAGGTGGAGTAAGAAGGAGAAGAGGGTTATCAATGAGTTTCTGCTATCTATCTCTAACAATACAAAGAGCCCTTCAGTGGGTCAGTGGTGGCAAACAGTGCAGCTATATACTGATCAGACTGGTGCCAATATTAGTAGAAACATAGTGATTACTAGTCAGCACGAAGATTACTACTCCCATGGTAAGGTACTGAGTAGGCTTACTGTTCAGGAAGTGATAAAGAATGCCATAACGGCCAAGACTAGTCCCCTTCCCATTGATCCCAAGAATGGCCTTTACCTCCTTCTCACTTCCAGTGATGTTGCTGTCCAGGACTTCTGCAGAGCAGTCTGTGGATTTCATTATTTTACATTCCCATCCATTGTAGGATACACACTGCCTTATGCATGGGTTGGGCATTCTGGAAAACAGTGCCCTGAAGTCTGTGCTTATCCTTTTGCAGTGCCAAGTTACATGACTGGAACGAAGGCATTCAAGGCACCTAATGGGGATGTTGGTATCGATGGGATGATAAGTGTGATTGCCCATGAATTGGCTGAGCTTTCTTCGAATCCCCTGATCAATGCCTGGTATGCTGGTGAGGATCCTACTTCTCCTACTGAGATTGCAGATCTCTGTGAAGGTCTTTATGGGACTGGAGGCGGTGGATCTTACACTGGACAAGTCCTGACAGACAAATTTGGGGCTAATTACAACGTCAATGGCATTAGGAGGAAGTATTTAGTGCAATGGATATGGAGTCCTATTTTGAATGCCTGCTCGGGACCAAATGCATTGGATAGCTGA___AGGTGCTCTAGTGTTCTTGTTAGTGGAAAATGGGTTTGCTAGTGTTATGGTCAGACTCAGGGGTTTTTCTCAAGCCTTACTATCACAAATTCTATTTGTGGGTTGGATCTAGACAGCTTATTCATGGCTTCTTATTGGTATAGACCTCAATATGCCTTAGGATTACTGTACCCAATAATGCAGAAAAGTGTTTTGGAACACTGGAGGCTCTAATCCCATTTCTATTTCTTGACAGTTTGTAGTGACTGTTCTTTTAACAGTCATCTCACTCTGTGTGCTTGCGTGTGTCTATACAGCTTTATCTATTTAGACTATTCAGAGAAATATCTATTTAGACTATTCAGAGAAATCTTGAACAGAGAGCATTGTTTACACAGCTTTATATATTTAGACTATTCAGAGAAATCTTGAGCAAAGAGCATTCA

Fln Alignment:

Contig5256___MGVFACVGLFLFIVLSSVEAWRPWPQYFNQSTTALGLGQQPNKADLQFGTSKKNEGSSPYVNMKYHMGPVLTSAINVHTIWYGRWSKKEKRVINEFLLSISNNTKSPSVGQWWQTVQLYTDQTGANISRNIVITSQHEDYYSHGKVLSRLTVQEVIKNAITAKTSPLPIDPKNGLYLLLTSSDVAVQDFCRAVCGFHYFTFPSIVGYTLPYAWVGHSGKQCPEVCAYPFAVPSYMTGTKAFKAPNGDVGIDGMISVIAHELAELSSNPLINAWYAGEDPTSPTEIADLCEXXXXXXXXXXXXXQVLTDKFGANYNVNGIRRKYLVQWIWSPILNACSGPNALDS
A9NS77_________________MGAFACVGLLFFIVLSSVEAWRPWPQYFNQTTTALGLKQQPNKADLQFGASKKHEGSSPYVNMRYHMGPVLTSAINVHTIWYGRWSKKEKRVINEFLLSISNNTKSPSVGQWWQTVQLYTDQTGANISRNIVIANEHEDYYSHGKILSRLTVQEVIKNAITTKSSPLPIDPKNGLYLLLTSSDVAVQDFCRAVCGFHYFTFPSIVGYTLPYAWVGHSGKQCPEVCAYPFAVPSYMTGMKAFKAPNGDVGIDGMISVIAHELAELSSNPLINAWYAGEDPTAPTEIADLCEGLYGTGGGGSYTGQVLTDKFGANYNVNGIRRRYLVQWIWSPIMNACSGPNALDS

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
608		85	14		1.0
867		83		16	0.994512
926			14	85	0.993533
929	87	12			0.992554
995	90		10		0.90298
996			10	90	0.90298
1493		14		85	0.993533
1496	14		85		0.993533
1497	85			14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain