SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5253

Length: 1270 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene5253

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27243	122/123

Source	Descriptions	Term	Type	Identity
AutoFact	Putative 40S Ribosomal protein [Oryza sativa Japonica Group] gb\|ABF94325.1\| 40S ribosomal protein SA, putative, expressed [Oryza sativa Japonica Group] gb\|EAZ25828.1\| hypothetical protein OsJ_09668 [Oryza sativa Japonica Group] gb\|ACJ54906.1\| 40S ribosoma	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	40s ribosomal protein sa	-	-	81%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S2	IPR001865	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	Ribosomal protein S2, eukaryotic/archaeal	IPR005707	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P0C9

Fln msg:

Fln protein: MAQKTGGLSQKEADIQMMLAADVHLGTKNCDFQMERYVYKRRSDGIFIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIREAALGNIPTIAFCDTDSPMKHVDIGIPANNKGKHSIGCLFWMLARMVLQMRGTILPGHKWDIMVDLFFYREADEAKEHEEEEAPVAEYTAEYVAPSLALPGGDQWGADIPDAQWGVPEPSAIPAVPALAVSDWPGAPGPIAAEGWDSAPAPLPSVAGWDASSIPSIPAAPVPGWDSAQPSWAPEAQ*

Protein Length: 323

Fln nts: GAGTCGGTCGTGTTCTCGTCTGTCATGTTTGTTTTCGGCAGGGCTTTCTCATGCTTTAGGTTTTGCAAAAGCTCGGAGGAAAGGAGAGAGTAACAGTGAGGTGTGCAGGTTGAGATCTGAAA_-_ATGGCGCAGAAGACGGGGGGTTTGTCTCAGAAGGAGGCAGACATTCAGATGATGCTTGCTGCCGATGTTCATCTCGGCACCAAAAACTGCGATTTTCAGATGGAGCGTTATGTGTACAAGAGGCGTTCTGATGGGATATTCATCATCAATTTAGGTAAGACTTGGGAAAAGCTTCAGCTCGCTGCAAGGGTGATTGTTGCAATTGAAAACCCACAGGATATTATTGTCCAGTCTGCAAGGCCATATGGGCAGCGAGCCGTCTTGAAGTTTGCTCAATACACTGGAGCACATGCAATAGCCGGCAGGCACACTCCTGGAACGTTTACAAATCAGATGCAGACTTCGTTTAACGAGCCTCGTTTGTTGATCCTCACTGATCCAAGGACTGACCATCAGCCCATAAGAGAAGCGGCCCTAGGTAATATTCCAACCATTGCTTTCTGTGACACGGATTCACCAATGAAACATGTGGATATTGGGATACCTGCCAACAACAAGGGAAAACATAGCATTGGATGCCTGTTTTGGATGCTTGCAAGAATGGTTCTGCAGATGCGAGGAACCATCCTTCCTGGTCATAAATGGGACATCATGGTTGATTTGTTCTTCTACAGAGAGGCCGACGAAGCTAAGGAGCACGAAGAGGAAGAGGCCCCTGTTGCTGAATATACTGCTGAGTATGTAGCACCTTCTCTCGCCCTTCCAGGAGGAGATCAGTGGGGTGCTGATATTCCAGATGCACAATGGGGGGTCCCTGAACCTAGTGCAATCCCTGCTGTGCCCGCGTTGGCCGTGTCTGACTGGCCCGGTGCTCCAGGTCCAATCGCTGCTGAAGGATGGGACTCAGCACCTGCTCCATTGCCATCAGTGGCAGGGTGGGATGCTTCATCGATCCCTAGTATTCCGGCTGCCCCAGTGCCTGGTTGGGATAGTGCACAACCCAGCTGGGCTCCTGAAGCTCAGTAG___GGTTTGTCTGGAATAGTTTTGTAGTTAGAATGAATTCAGTTTTGTAATGTCGGATGACTGAACTTCCATTAGGTTAATGTTAGGATCATCATGTTGTTGAAATGAGTTTGTGATACTCAGATTTATTCTAGTTAAAAAAAGGTTCTTCCTTACAAATGATGTAGTAGGGCAAACGCTACTAT

Fln Alignment:

Contig5253___MAQKTGGLSQKEADIQMMLAADVHLGTKNCDFQMERYVYKRRSDGIFIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIREAALGNIPTIAFCDTDSPMKHVDIGIPANNKGKHSIGCLFWMLARMVLQMRGTILPGHKWDIMVDLFFYRXXXXXXXXXXXXXXXXXXXXXYVAPSLALPGGDQWGADIPDAQWGVPEPSAIPAVPALAVSDWPGAPGPIAAEGWDSAPAPLPSVAGWDXXXXXXXXXXXVPGWDSAQPSWAPEA
A9P0C9_________________MAQKMGGLSQKEADIQMMLAADVHLGTKNCDFQMERYVYKRRSDGIFIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIREAALGNIPTIAFCDTDSPMKHVDIGIPANNKGKHSIGCLFWMLARMVLQMRGTILPGHKWDIMVDLFFYREPEEAKEHEDEEAPVAEYTADYTAPALALP-GDQWGADIPDAQWGAPEPSAIPAVPALAASDWPGTAVPIAAEGWDTAPAPLPPAAEWNAASMPSIPAAPVPGWDSAQPGWTPEA

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
1066	92		7		0.999532
1068		89	3	6	0.998304
1204	73		26		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain