SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5247

Length: 1147 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene5247

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15453	87/90
SustainPine v2.0	sp_v2.0_unigene60526	2/90

Source	Descriptions	Term	Type	Identity
AutoFact	60S ribosomal protein L11-1 n=51 Tax=Embryophyta RepID=RL111_ARATH	-	-	94%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	60s ribosomal protein l11	-	-	98%

Source	GOs	Term	Type	Identity
Blast2go	nucleolus	GO:0005730	Cellular Component	98%
Blast2go	vacuole	GO:0005773	Cellular Component	98%
Blast2go	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	98%
Blast2go	chloroplast	GO:0009507	Cellular Component	98%
Blast2go	membrane	GO:0016020	Cellular Component	98%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L5	IPR002132	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPD1

Fln msg:

Fln protein: MAAEKKLSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGEKALQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRIGRRKRAQSRVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI*

Protein Length: 182

Fln nts: TTGAAATGATTGATAAAATAGAGGAAGTTAGGTTAGGTGTCTTGCAGCAGGCGGGATTGGGTTCTGAGGCAGGGGCAGCAGCAGAAACAGCAGTCGGCGGGAACCAGCGTAGGAGAA_-_ATGGCAGCGGAGAAGAAACTGAGCAACCCCATGCGGGAAATTAAGGTGCAGAAGTTGGTGCTTAACATATCAGTTGGTGAGAGTGGCGATCGACTCACTCGAGCTTCCAAGGTGCTGGAGCAGCTGAGTGGCCAGACTCCGGTTTTTTCTAAGGCAAGGTATACTGTGAGGTCCTTTGGAATTAGGCGAAATGAAAAGATTGCCTGCTACGTTACTGTTAGAGGAGAGAAGGCTCTTCAGCTTTTGGAGAGTGGGCTGAAAGTGAAAGAATATGAGTTGCTCCGAAGGAACTTTAGCGACACAGGGTGCTTTGGTTTTGGGATTCAGGAGCACATTGATCTGGGAATCAAGTACGATCCTTCAACTGGTATTTATGGTATGGACTTCTTTGTAGTCCTAGAGCGCCCTGGATACAGAATTGGCAGAAGAAAGAGAGCCCAATCCCGTGTTGGCATTCAGCACAGGGTTACCAAGGATGATGCTATGAAGTGGTTCCAAGTTAAATATGAAGGAGTCATCCTCAACAAATCACAAAATATTTAA___ATGAGAAGTTTTAGTATGTTCCTTTCTAAGAGTAGTGTTGTTTTGATTTTGCCACTTAAGTTGACACAACCTAAAGGAAGGAAATTTTCTTCGGGTTATAGGCTCACATTTGTCTTTCGAAGAGATATTGGAAGGGCGGATTATTTTTTTTGCAGGAAACTTTTGTACCTTTTTAATAGTATTTAGATCATTTTGTTGCATGCAAAGTTTACGGCCATGCCTCCTTGTGAAGTTCAAGGACATACTCTCTTATTTGAAAATTTGTTTTCGATTTTGAAGTGGAAGAGATTGACATCATTGTTGGATTTGAACTAAGTAGAGCAATATATGATTTTAATGGATGGATGTATCATTCCATTCAATCTGTTAAAATCCAAGGTCAATGTATTTTCTGAATGCCCCGGCTTGGGAAAGTGTTCTGCTTTGTGACATTTCTTTTGGGTCATCTTCGTCTTTGTGTGAACATAAAGGACACACATCTTCATTT

Fln Alignment:

Contig5247___MAAEKKLSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGEKALQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRIGRRKRAQSRVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI
A9NPD1_________________MAAEKKLNNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGEKALQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRIGRRKRAQSRVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain