SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5243

Length: 1284 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene5243 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15772	52/126
SustainPine v2.0	sp_v2.0_unigene15888	70/126
SustainPine v2.0	sp_v2.0_unigene24818	3/126

Source	Descriptions	Term	Type	Identity
AutoFact	Cellular nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9R835_RICCO	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	cellular nucleic acid-binding protein	-	-	60%

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR013084	-	0.0	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NS35

Fln msg:

Fln protein: MNFDNGGARRGRRIQSDVVGRRTFRRSEPYRLYPNDRNGYGPRSSRPIELCNNCKRTGHYARECPNASVCNNCGVSGHIASKCPKEQLCRNCKKPGHLAADCRNEPVCNMCGKTGHMAKECSAHELGLPKSALCKKCYLPGHIMADCPNDKACNNCRQTGHLARDCMNSPVCNGCGEPGHLVRDCPRVQSPPRMMAPRGGFETRGGFETRGGFDDFKIIYCHVCGGRGHLSMDCPSDPLFMRGGFRR*

Protein Length: 249

Fln nts: ATGGGAACCATTAGCGATAATATCTTCCGTTTCAAGTGAACACTCACGCCGAAGCCGTCAGGACCTTTGGTTATAAGGGTGTTGTGTAATTCTAAACCCTGGTTGGTGTATTCTCAGAGGTTGAAGCTGAGGGGAGCGTCCGCTCGAGGTACGCGAAGCACCTACGCAGCGGCATTCGAACTCTCGACCCATACATCAGATTTCACAGTGACCCTTGAATACAGGTAAGCGTAAGG_-_ATGAATTTTGACAATGGAGGAGCACGGAGGGGACGACGCATTCAGAGTGATGTAGTAGGGAGACGCACATTTCGTCGCAGCGAGCCTTATAGACTATACCCTAATGATAGGAATGGATATGGTCCCAGGTCTTCCAGGCCTATTGAGCTTTGTAACAACTGCAAGCGAACAGGGCACTATGCACGAGAGTGTCCGAATGCTTCTGTATGCAACAACTGTGGAGTTTCGGGGCACATTGCATCGAAGTGTCCAAAAGAGCAATTATGCAGGAATTGCAAGAAGCCTGGTCATCTTGCAGCTGATTGCCGCAATGAGCCTGTCTGTAACATGTGTGGTAAAACAGGTCACATGGCAAAGGAATGTTCTGCTCATGAGCTAGGACTTCCAAAATCAGCACTCTGCAAGAAGTGCTATTTGCCTGGGCATATTATGGCAGACTGTCCTAATGACAAGGCCTGCAATAATTGTCGCCAGACTGGCCACTTGGCTCGAGATTGTATGAATAGCCCGGTTTGCAATGGCTGTGGTGAACCTGGTCATCTTGTCAGGGACTGCCCCCGTGTTCAAAGCCCTCCTAGAATGATGGCACCACGTGGAGGGTTTGAAACACGTGGAGGTTTTGAAACACGTGGAGGGTTTGATGATTTCAAGATTATTTACTGCCATGTCTGTGGGGGTCGTGGACATCTCTCTATGGACTGTCCTTCAGATCCACTGTTTATGCGTGGTGGCTTCCGACGTTGA___GAACTTCGGAACTGCTGTACAAATTTGGGAAGTCACACGATGAAGCTTAGTTTCAGTCTTCGGGTGAAGTTGCGGTCTTAATTTTCCAGCCACTTTATACTGGTGTGATTTAGTTTGCCGAATTTATATTAATATTGGCAGTAGATTACTTTATTTCTTTTTAGTGCAAGTGTAAGACTAGTCTGTTACTAAATGCCAGGAAATTAAACTATTTGAACGTTTTCTGCCGGCTTCAACCACAACGATGAATTTTGATAATGTTACTGGAGAATTAAGGCGACAAAAATTTGTATGGAATGCATGA

Fln Alignment:

Contig5243___MNFDNGGARRGRRIQSDVVGRRTFRRSEPYRLYPNDRNGYGPRSSRPIELCNNCKRTGHYARECPNASVCNNCGVSGHIASKCPKEQLCRNCKKPGHLAADCRNEPVCNMCGKTGHMAKECSAHELGLPKSALCKKCYLPGHIMADCPNDKACNNCRQTGHLARDCMNSPVCNGCGEPGHLVRDCPRVQSPPRMMAPRGGFETRGGFETRGGFDDFKIIYCHVCGGRGHLSMDCPSDPLFMRGGFRR
A9NS35_________________MNFDNEGSRRGRRIQSDVVGRRTFRRSEPYRPYPHDRNGYGPRSSRPVELCNNCKRTGHYARECPNASVCNNCGVSGHIASKCPKEQLCRNCKKPGHLAADCRNEPVCNMCGKTGHLAKECSAHELGLPKSALCKKCYLPGHIMADCPNDKACNNCRQTGHLARDCVNSPVCNGCGEPGHLVRDCPRVQSPPRIMPPRGGF--GGGF--GGGFDDFKIIICRVCGGRGHLSVDCPSDPLFMRGGFRR

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
959			5	94	0.998397
1080		8	91		0.999766
1156		10		89	0.999919
1159			88	11	0.999952
1173		23	76		1.0
1182	25	75			1.0
1183	28	71			1.0
1184		71	28		1.0
1185	14	57		28	1.0
1187			28	71	1.0
1188	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain