SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5239

Length: 1112 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene5239

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18498	130/133
SustainPine v2.0	sp_v2.0_unigene62391	3/133

Source	Descriptions	Term	Type	Identity
AutoFact	60S ribosomal protein L15-1 n=8 Tax=Embryophyta RepID=RL15A_PICMA	-	-	85%
FL-Next	sp=Ribosomal protein L15; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	protein	-	-	94%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L15e	IPR000439	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZ28

Fln msg: your sequence is longer than subject: 236 - 204

Fln protein: MGLYMVLRSGSIGGEGADRDSEVAGDLSNPSMGAYKYIEELWKKKQSDVMRFLQRVRCWEYRQLPGIVRITRPTRPDKARRLGYKAKQGYVVYRIRVRRGGRKRPVPKGIVYGKPKNQGITQLKFQRSLRSVAEERAGRKLGGLRVLNSYWINQDSTYKYYEVILVDQAHKVIRNDPRINWICNAVHKHRELRGLTSAGKKYRGLRGRGHLYHKARPSKRATWKRNNTLSLRRYR*

Protein Length: 237

Fln nts: ATGGGGGAATTTCC_-_ATGGGGCTCTATATGGTTTTGAGAAGTGGGAGCATCGGCGGAGAGGGCGCAGACAGAGACTCAGAGGTAGCAGGGGATTTGAGCAATCCATCCATGGGTGCGTATAAGTACATAGAGGAGTTATGGAAGAAGAAGCAATCGGATGTGATGAGATTTCTGCAGAGGGTCAGGTGTTGGGAGTACAGGCAGCTCCCCGGCATTGTGAGGATTACTCGCCCAACTCGTCCCGATAAGGCACGCCGTCTTGGATATAAGGCCAAACAGGGTTATGTTGTTTACCGCATACGAGTAAGGCGTGGTGGGCGGAAGAGGCCAGTGCCCAAAGGTATTGTTTACGGGAAGCCCAAGAATCAGGGTATTACCCAACTCAAGTTCCAGCGTAGCTTGAGATCCGTGGCAGAAGAGAGAGCCGGACGAAAGCTGGGAGGATTGAGAGTTTTGAACTCTTACTGGATCAACCAGGACTCCACCTACAAGTATTATGAAGTGATCCTGGTTGACCAGGCACACAAGGTAATACGAAATGATCCTCGAATCAACTGGATCTGTAATGCAGTTCACAAGCACAGAGAGCTTCGTGGACTTACATCAGCTGGAAAGAAGTACAGGGGTCTCCGAGGACGGGGCCATCTGTACCACAAGGCTCGTCCTTCCAAACGTGCTACATGGAAAAGAAACAATACTCTATCTCTTCGGCGTTATCGATAG___ATTCTTGGGTAGCATCTATAATAGCTTTGCATTCAAAACTTATATTGTTTCATTTGTCGGCAGCATACTGTTTTGTTAGTCTAGAGAAACAACTGGTGGTTTAGTTTATTTCTAAATGGACGTAATTTTTGAGTCTGCGCTCTTACTGTTTCTGCAATTGAAACATGCGAGAAATTGAAATTGTTGATCTTTTAGAGTTTCTGATTGGATCTAGTCTTCTTGAAAGAGTTGATTCTATCAAATTGAGTCAGGGCAGGTATTTGTGTCTTCAATTTTTCGGCTGATATCTATATTCTGTTGTCCCATATAATTGAGAGGGATTGAAGTGGAACATATATGTGCTTATTACCTTTGTTTAACTGCAATAAATAGAGGTCCACTTAATGCCAT

Fln Alignment:

Contig5239___MGAYKYIEELWKKKQSDVMRFLQRVRCWEYRQLPGIVRITRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXXVYGKPKNQGITQLKFQRSLRSVAEERAGRKLGGLRVLNSYWINQDSTYKYYEVILVDQAHKVIRNDPRINWICNAVHKHRELRGLTSAGKKYRGLRGRGHLYHKARPSKRATWKRNNTLSLRRYR
A9NZ28_________________MGAYKYIEELWKKKQSDVMRFLQRVRCWEYRQLPGIVRITHPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPKNQGITQLKFQRSLRSVAEERAGRKLGGLRVLNSYWINQDSTYKYYEVVLVDQAHTVIRNDPRINWICNAVHKHRELRGLTSAGKKYRGLRGRGHLYHKARPSKRATWKRNNTLSLRRYR

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
707		8		92	0.999718
801			90	10	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain