SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5235

Length: 1044 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene5235 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15662	137/137

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Proline-rich protein n=1 Tax=Pinus taeda RepID=Q9LLZ6_PINTA	-	-	7.9874e-44	71%
FL-Next	tr=Proline-rich protein; Pinus taeda (Loblolly pine).	-	-	0.0	89%
Blast2go	lipid binding	-	-	0.0	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	Plant lipid transfer protein/hydrophobic protein helical domain	IPR013770	-	0.0	-
Sma3		IPR003612	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
668	92		7		0.999999
1035	7	71			1.0

SSRs (tot: 2)

Start position	End position	Sequence	Length
181	201	TGACAG TGACAG TGACAG TGA	21
460	474	TC TC TC TC TC TC TC T	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain