SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5226

Length: 2803 nt

UniGene Fasta

>biog2_v2.0_unigene5226
ACATGGGGGCAAATCTAAAGAATAACTGGCTTTCTTTCATTCGGCGATTTTCAGATAGTGAAGCTAAAGAATCTGCGCTGTAAGCAGACTGTTTCTTGAAAGTTTTCCGAAGAGTAGGTGCAAGGAAGAGAAAAGGATCTCCATAATACCGCACAAAATCGATTTCACAGAGCGCAATATAAAATGAATCCCGAGAAATTTACACACAAAACAAATGAGGCTCTAGCCGCGGGTCTAGAGATCGCTACAGAATCTGGTCACGCCCAGTACACTCCTGTACATTTGGCCATAGCTCTTACCGAGGACAAAGGGGGTATTCTCCGTCAAGCGATTTCATCTGCTGCAGGTGGAGAGGAAACTGTGGAAGCAGTACAGAGAGTCCTTCGACAGGCCCTGAAGAAACTCCCATCCCAAGATCCTGCCCCCGACAGTATTCCTCCTAACACTTCGTTAATAAAGTCCATCAGGCGTGCTCAGTCTTCACAAAAGAGCAAGGGGGACACTCATTTGGCAGTAGATCATCTTATTCTTGGAGTGCTAGAAGACTCTCAGGTTTCAGATTGCTTTAGAGAGGCAGGTGTGAGTATAGCGAGAGTGAAATCCGAAGTGGAGAAGCTCAGAGGAGAGGGCAAAAAGGTAGATACTGCGTCCGGTGATACTAATTTTCAGGCCTTGAAAACATATGGCCGCGATTTGGTTGAAGATGCTGGGAAGCTTGATCCTGTCATTGGTAGAGATGAAGAAATTCGGAGAGTAGTTAGAATTTTGTCTCGGAGGACCAAGAACAATCCTGTGCTCATTGGAGAGCCTGGTGTTGGAAAGACTGCTGTGGTGGAAGGGCTGGCACAAAGAATTGTTCGAGGGGATGTACCAAGCAATTTGCTAGAAGTGAGATTGATAGCTTTGGATATGGGAGCTCTAGTGGCTGGTGCCAAATACAGAGGCGAATTCGAAGAGCGACTTAAATCTGTATTGAAAGAGGTAGAAGAAGCTCATGGAAAAGTTATTCTCTTTATTGACGAAATCCATTTGGTTCTGGGTGCCGGGCGTACTGAGGGATCCATGGATGCTGCCAATTTATTTAAACCGATGCTTGCTCGCGGCCAGCTTAGGTGCATTGGAGCAACTACTCTGGAAGAGTACCGGAAGTATGTGGAGAAAGACGCTGCGTTTGAGCGACGATTCCAGCAAGTTTATGTAGCTGAACCTAGTGTGACAGACACTATTAGTATCCTTCGTGGTTTAAAAGAAAAGTACGAAGGTCATCATGGTGTTAGAATATTGGACAGAGCACTTGTAGTTGCTGCCCAATTATCAAGTAGATATATCACTGGGCGACATCTTCCAGACAAAGCAATTGATCTTGTGGATGAAGCATGTGCAAATGTAAGAGTTCAACTAGATAGTCAACCTGAAGAAATTGACACCCTTGAAAGGAAAAGGATTCAACTAGAAGTTGAGTTGCATGCCCTTGAAAAGGAGAAAGATAAGGCTAGTAAAGCTCGTTTGGCTGAGGTTCACAAGGAGCTTGATGATTTGAGAGATAAGTTGCAACCGTTGAAAATGAAATACCAAAAAGAAAAAGAGAGAGTAGATGAAATCCGGCGACTGAAGCAAAAACGTGAGGAATTGCAGATTACTTTGGAAGAAGCAAAGCGTAGGATGGATTTGGCACGAGTTGCAGATCTTCAATATGGGGCCCTTCAAGAAATAGAGACTGCAATTTCTAGACAAGAAGCTGGGATGGGAGAAAATCTCATGTTAACAGAGAGTGTGGGACCTGATCAGATTGCAGAGGTTGTGAGTCGTTGGACTGGTATCCCTGTTACAAGACTTGGTCAGAATGAAAAGGAGCGACTGATAGGTCTGGCAGAGAGGTTGCATGAAAGAGTTGTTGGACAAGATGAGGCGGTTCAAGCGGTTGCCGAAGCTGTGTTAAGATCGCGGGCTGGACTTGGAAGACCTCAACAGCCGACTGGATCTTTCCTATTCTTGGGGCCCACTGGAGTTGGCAAAACGGAACTTGCAAAGGCTCTTGCAGCTCAATTGTTTGATGATGAAAATCTGCTGGTCCGTATTGATATGTCTGAATATATGGAGCAACATTCAGTTGCAAGGCTCATAGGTGCTCCTCCTGGTTATGTTGGTTATGAAGAAGGGGGGCAACTGACAGAGGCAGTAAGGAGAAGACCCTATAGTGTTGTTCTTTTTGATGAAGTTGAGAAAGCACACGCTTCAGTCTTCAACACATTGCTTCAAATGCTTGATGATGGTAGACTTACGGATGGACAAGGTCGGACAGTTAGCTTCTCAAACACAGTCATTATCATGACGTCCAACCTTGGAGCAGAACACTTGCTTGCTGCATTGTCTGGCCACACAACAATAAAAACCGCAAGAGAGAACGTCATGCAAGAAGTTAGAAGACATTTCAGGCCAGAGTTATTGAATAGACTTGATGAGATAGTTGTATTTGATCCTCTTTCTCATGATCAGCTCAAGAAAGTTGCTAGACTACAGATGAAAGATGTAGCAATTCGTCTTGCAGAGAGAGGTGTTGCTTTAGGGGTTACAGATGCCGCTCTGGATCTTGTTCTTCAGGAAGCCTATGACCCTGTTTATGGTGCTCGCCCCTTGCGACGATGGCTGGAAAGAAAAGTTGTCACTCAGCTATCTCGGATGCTCATCAGTGGGGAGATTGATGAGAACAGTACAGTATACATTGATGCAGTGCCTGAGCAGCAGACATTATCTTATCGCGTGGACAGGCAGGGGGGAATCGTTAACCAAAAGACTGGTGCAA

Ace file of the UniGene biog2_v2.0_unigene5226

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22600	218/222
SustainPine v2.0	sp_v2.0_unigene76876	2/222

Source	Descriptions	Term	Type	Identity
AutoFact	Heat shock protein 101 n=20 Tax=Poaceae RepID=HS101_ORYSJ	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	heat shock protein 101	-	-	90%

Source	InterPros	Term	Type	Identity
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-2	IPR013093	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	Chaperonin ClpA/B, conserved site	IPR018368	-	-
Sma3	Chaperonin ClpA/B	IPR001270	-	-
Sma3	Clp, N-terminal	IPR004176	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQS4

Fln msg: STOP codon was not found. Distance to subject end: 410 aas, your sequence is longer than subject: 873 - 463

Fln protein: MNPEKFTHKTNEALAAGLEIATESGHAQYTPVHLAIALTEDKGGILRQAISSAAGGEETVEAVQRVLRQALKKLPSQDPAPDSIPPNTSLIKSIRRAQSSQKSKGDTHLAVDHLILGVLEDSQVSDCFREAGVSIARVKSEVEKLRGEGKKVDTASGDTNFQALKTYGRDLVEDAGKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLLEVRLIALDMGALVAGAKYRGEFEERLKSVLKEVEEAHGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVTDTISILRGLKEKYEGHHGVRILDRALVVAAQLSSRYITGRHLPDKAIDLVDEACANVRVQLDSQPEEIDTLERKRIQLEVELHALEKEKDKASKARLAEVHKELDDLRDKLQPLKMKYQKEKERVDEIRRLKQKREELQITLEEAKRRMDLARVADLQYGALQEIETAISRQEAGMGENLMLTESVGPDQIAEVVSRWTGIPVTRLGQNEKERLIGLAERLHERVVGQDEAVQAVAEAVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAAQLFDDENLLVRIDMSEYMEQHSVARLIGAPPGYVGYEEGGQLTEAVRRRPYSVVLFDEVEKAHASVFNTLLQMLDDGRLTDGQGRTVSFSNTVIIMTSNLGAEHLLAALSGHTTIKTARENVMQEVRRHFRPELLNRLDEIVVFDPLSHDQLKKVARLQMKDVAIRLAERGVALGVTDAALDLVLQEAYDPVYGARPLRRWLERKVVTQLSRMLISGEIDENSTVYIDAVPEQQTLSYRVDRQGGIVNQKTGA

Protein Length: 874

Fln nts: ACATGGGGGCAAATCTAAAGAATAACTGGCTTTCTTTCATTCGGCGATTTTCAGATAGTGAAGCTAAAGAATCTGCGCTGTAAGCAGACTGTTTCTTGAAAGTTTTCCGAAGAGTAGGTGCAAGGAAGAGAAAAGGATCTCCATAATACCGCACAAAATCGATTTCACAGAGCGCAATATAAA_-_ATGAATCCCGAGAAATTTACACACAAAACAAATGAGGCTCTAGCCGCGGGTCTAGAGATCGCTACAGAATCTGGTCACGCCCAGTACACTCCTGTACATTTGGCCATAGCTCTTACCGAGGACAAAGGGGGTATTCTCCGTCAAGCGATTTCATCTGCTGCAGGTGGAGAGGAAACTGTGGAAGCAGTACAGAGAGTCCTTCGACAGGCCCTGAAGAAACTCCCATCCCAAGATCCTGCCCCCGACAGTATTCCTCCTAACACTTCGTTAATAAAGTCCATCAGGCGTGCTCAGTCTTCACAAAAGAGCAAGGGGGACACTCATTTGGCAGTAGATCATCTTATTCTTGGAGTGCTAGAAGACTCTCAGGTTTCAGATTGCTTTAGAGAGGCAGGTGTGAGTATAGCGAGAGTGAAATCCGAAGTGGAGAAGCTCAGAGGAGAGGGCAAAAAGGTAGATACTGCGTCCGGTGATACTAATTTTCAGGCCTTGAAAACATATGGCCGCGATTTGGTTGAAGATGCTGGGAAGCTTGATCCTGTCATTGGTAGAGATGAAGAAATTCGGAGAGTAGTTAGAATTTTGTCTCGGAGGACCAAGAACAATCCTGTGCTCATTGGAGAGCCTGGTGTTGGAAAGACTGCTGTGGTGGAAGGGCTGGCACAAAGAATTGTTCGAGGGGATGTACCAAGCAATTTGCTAGAAGTGAGATTGATAGCTTTGGATATGGGAGCTCTAGTGGCTGGTGCCAAATACAGAGGCGAATTCGAAGAGCGACTTAAATCTGTATTGAAAGAGGTAGAAGAAGCTCATGGAAAAGTTATTCTCTTTATTGACGAAATCCATTTGGTTCTGGGTGCCGGGCGTACTGAGGGATCCATGGATGCTGCCAATTTATTTAAACCGATGCTTGCTCGCGGCCAGCTTAGGTGCATTGGAGCAACTACTCTGGAAGAGTACCGGAAGTATGTGGAGAAAGACGCTGCGTTTGAGCGACGATTCCAGCAAGTTTATGTAGCTGAACCTAGTGTGACAGACACTATTAGTATCCTTCGTGGTTTAAAAGAAAAGTACGAAGGTCATCATGGTGTTAGAATATTGGACAGAGCACTTGTAGTTGCTGCCCAATTATCAAGTAGATATATCACTGGGCGACATCTTCCAGACAAAGCAATTGATCTTGTGGATGAAGCATGTGCAAATGTAAGAGTTCAACTAGATAGTCAACCTGAAGAAATTGACACCCTTGAAAGGAAAAGGATTCAACTAGAAGTTGAGTTGCATGCCCTTGAAAAGGAGAAAGATAAGGCTAGTAAAGCTCGTTTGGCTGAGGTTCACAAGGAGCTTGATGATTTGAGAGATAAGTTGCAACCGTTGAAAATGAAATACCAAAAAGAAAAAGAGAGAGTAGATGAAATCCGGCGACTGAAGCAAAAACGTGAGGAATTGCAGATTACTTTGGAAGAAGCAAAGCGTAGGATGGATTTGGCACGAGTTGCAGATCTTCAATATGGGGCCCTTCAAGAAATAGAGACTGCAATTTCTAGACAAGAAGCTGGGATGGGAGAAAATCTCATGTTAACAGAGAGTGTGGGACCTGATCAGATTGCAGAGGTTGTGAGTCGTTGGACTGGTATCCCTGTTACAAGACTTGGTCAGAATGAAAAGGAGCGACTGATAGGTCTGGCAGAGAGGTTGCATGAAAGAGTTGTTGGACAAGATGAGGCGGTTCAAGCGGTTGCCGAAGCTGTGTTAAGATCGCGGGCTGGACTTGGAAGACCTCAACAGCCGACTGGATCTTTCCTATTCTTGGGGCCCACTGGAGTTGGCAAAACGGAACTTGCAAAGGCTCTTGCAGCTCAATTGTTTGATGATGAAAATCTGCTGGTCCGTATTGATATGTCTGAATATATGGAGCAACATTCAGTTGCAAGGCTCATAGGTGCTCCTCCTGGTTATGTTGGTTATGAAGAAGGGGGGCAACTGACAGAGGCAGTAAGGAGAAGACCCTATAGTGTTGTTCTTTTTGATGAAGTTGAGAAAGCACACGCTTCAGTCTTCAACACATTGCTTCAAATGCTTGATGATGGTAGACTTACGGATGGACAAGGTCGGACAGTTAGCTTCTCAAACACAGTCATTATCATGACGTCCAACCTTGGAGCAGAACACTTGCTTGCTGCATTGTCTGGCCACACAACAATAAAAACCGCAAGAGAGAACGTCATGCAAGAAGTTAGAAGACATTTCAGGCCAGAGTTATTGAATAGACTTGATGAGATAGTTGTATTTGATCCTCTTTCTCATGATCAGCTCAAGAAAGTTGCTAGACTACAGATGAAAGATGTAGCAATTCGTCTTGCAGAGAGAGGTGTTGCTTTAGGGGTTACAGATGCCGCTCTGGATCTTGTTCTTCAGGAAGCCTATGACCCTGTTTATGGTGCTCGCCCCTTGCGACGATGGCTGGAAAGAAAAGTTGTCACTCAGCTATCTCGGATGCTCATCAGTGGGGAGATTGATGAGAACAGTACAGTATACATTGATGCAGTGCCTGAGCAGCAGACATTATCTTATCGCGTGGACAGGCAGGGGGGAATCGTTAACCAAAAGACTGGTGCAA

Fln Alignment:

Contig5226___MNPEKFTHKTNEALAAGLEIATESGHAQYTPVHLAIALTEDKGGILRQAISSAAGGEETVEAVQRVLRQALKKLPSQDPAPDSIPPNTSLIKSIRRAQSSQKSKGDTHLAVDHLILGVLEDSQVSDCFREAGVSIARVKSEVEKLRGEGKKVDTASGDTNFQALKTYGRDLVEDAGKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLLEVRLIALDMGALVAGAKYRGEFEERLKSVLKEVEEAHGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVTDTISILRGLKEKYEGHHGVRILDRALVVAAQLSSRYITGRHLPDKAIDLVDEACANVRVQLDSQPEEIDTLERKRIQLEVELHALEKEKDKASKARLAEVHKELDDLRDKLQPLKMKY
B8LQS4_________________MNPDKFTHKTNEALAAGLEIATDSGHAQYTPVHLAIALIEDKAGILRQAISSAAGGDETVEAVLRVLRQALKKIPSQDPAPDSIPPNTSLIKSIRRAQSSQKSKGDTHLAVDHLILGVLEDSQVSDCFREAGVSAARVKSEVEKLRGEGKKVDTASGDTNFQALKTYGRDLVEDAGKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLLDVRLIALDMGALVAGAKYRGEFEERLKSVLKEVEDAQGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVTDTISILRGLKEKYEGHHGVRILDRALVVAAQLSSRYITGRHLPDKAIDLVDEACANVRVQLDSQPEEIDTLERKRIQLEVEMHALEKEKDKASKARLVEVRKELDDLRDKLQPLKMKY

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
910	75		25		0.996473
911			25	75	0.996473
1002	83			16	0.994512
1004			16	83	0.994512
1005			16	83	0.994512
1016	11			88	0.923564
1019	88		11		0.923564
1020		88	11		0.923564
1062	88	11			0.923564
1164		64		35	1.0
1275			31	68	1.0
1565		10		90	0.90298
2432			10	90	0.90298
2433			10	90	0.90298
2434		90	10		0.90298
2710		23		76	1.0
2772	88		11		0.923564
2773	20		60		0.99255

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain