SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5222

Length: 1402 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene5222 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5800	158/175
SustainPine v2.0	sp_v2.0_unigene81127	14/175
SustainPine v2.0	sp_v2.0_unigene81404	2/175

Source	Descriptions	Term	Type	Identity
AutoFact	WS00731.B21_I11 WS-PS-N-A-8 Picea glauca cDNA clone WS00731_I11 3, mRNA sequence.	-	-	84%
FL-Next	sp=Desiccation-related protein PCC13-62; Craterostigma plantagineum.	-	-	48%
Blast2go	desiccation-related protein pcc13-62-like	-	-	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	0.0	70%

Source	InterPros	Term	Type	e value	Identity
Sma3	RNA recognition motif domain	IPR000504	-	0.0	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P22242

Fln msg:

Fln protein: MAKHLGLLLCWSWYLLLFPMDITHSISEEKCLIHCSEDYYYSTGIYRPGPVTAMDADTLNFALNLEYLEGEYFNRALYREGLDKFDSGLSGGGPPPIGFELANLDPPTRDIIQQLGLQEVGHIRIIRETVKEAIPRPLLDLGVEVWAKFFKEALGYHLSPPFNPYANSVNFVLSAYFIPYIGLTGYVGANPNLTTATAKRLVAGLLGVESGQDAVIRYWLYERRYEKVYPYPITVAEITAKISILRNNLGKTGIVDEGLIVPKELGAEGRVSGNILSADPNSVSYSRTPREILRILYDTGNESIAGGFYPRGANGRVARSYLLPPHAG*

Protein Length: 330

Fln nts: AATGAGAATCCCTTATAGAAAACAAATAGCAATGTGTGTTGGAACAGAACTGATAGGGAGAGATTGCAACAGGCCACCTTCTCAATTCAAAGAAACTGACAACGAGATCAGGTAGTAATCGATTACAAATGTGAACCTGCTCTACTCTCGGATGTGGGATTGCAGATCAA_-_ATGGCAAAACACCTAGGCTTGCTGTTATGTTGGTCATGGTACTTGTTATTATTTCCCATGGATATTACTCATAGCATTTCGGAAGAAAAATGCTTAATTCATTGTTCAGAAGATTACTATTACTCTACTGGGATCTATCGTCCAGGGCCTGTCACTGCCATGGACGCTGATACACTAAACTTTGCCCTCAACTTGGAGTATCTAGAGGGTGAATACTTCAATCGTGCTTTATACAGAGAAGGGCTAGACAAGTTTGACTCTGGTCTCTCAGGGGGAGGTCCTCCACCTATTGGCTTTGAGTTAGCAAATCTCGACCCTCCAACACGAGACATTATCCAGCAACTCGGCTTGCAGGAGGTCGGCCATATAAGGATCATTCGCGAGACTGTTAAAGAAGCGATTCCACGACCTCTGCTAGATCTCGGAGTGGAAGTGTGGGCGAAATTCTTCAAGGAAGCCTTAGGATATCACCTCAGTCCCCCATTCAATCCTTATGCCAATTCTGTTAACTTTGTTCTTTCCGCGTATTTCATTCCTTACATTGGTCTTACAGGCTACGTCGGGGCGAATCCAAACTTGACCACAGCGACTGCAAAACGACTTGTCGCAGGGCTTCTTGGAGTGGAATCAGGGCAGGACGCAGTGATACGTTACTGGCTATACGAAAGAAGGTATGAGAAGGTTTATCCATACCCAATTACAGTTGCAGAGATTACAGCGAAGATATCGATTCTTCGGAACAATCTCGGAAAGACAGGAATCGTAGATGAAGGATTAATAGTGCCAAAGGAGCTAGGAGCTGAAGGAAGAGTGAGCGGTAACATTTTATCTGCAGATCCAAACTCTGTGTCATACAGCAGAACTCCAAGGGAGATCTTGAGAATTTTGTATGACACAGGAAATGAATCCATAGCCGGGGGATTTTATCCGCGCGGGGCCAATGGACGCGTTGCCAGAAGCTATCTGCTCCCGCCGCATGCTGGGTAA___CATGCGATGTTGCCATTGCCATGGACTAGATTTTATGTAAACTCTAAATAATTCCTTGGAGGAACCTCATGCTCCCCAATAAACCTCACATCACTCCGAACCAGCCTATGTACCGCTAAACCCTAGTAGATATTCCGTGGATGTATAAATCAACTTTATACTATACTAAATATATTTTGGTATTTTGTACTTCAAAACATTTTTGTGTTTCTGTTATAAAATTCTACATGGATTCGATGGAGAAC

Fln Alignment:

Contig5222___YSTGIYRPGPVTAMDADTLNFALNLEYLEGEYFNRALYREGLDKFDSGLSXXXXXPIGFELANLDPPTRDIIQQLGLQEVGHIRIIRETVKEAIPRPLLDLGVEVWAKFFKEALGYHLSPPFNPYANSVNFVLSAYFIPYIGLTGYVGANPNLTTATAKRLVAGLLGVESGQDAVIRYWLYERRYEKVYPYPITVAEITAKISILRNNLGKTGIVDEGLIVPKELGAEGRVSGNILSADPNSVSYSRTPREILRILYDTGNESIAGGFYPRGANGR
P22242_________________YAAWHHEKDDIPKSDVSLLEFPLNLELLEAEFFAWAAFGKGIDELEPELAKGGPSPIGVQKANLSPFIRDIIAQFAYQEFGHVRAIQSSV-EGFPRPLLDLSAKSFATVMDSAFGKTLKPPFDPYANDINYLLACYVVPYVGLTGYVGANPKLESPVSRKLVAGLLAVEAGQDAIIRALLYERATDKVEPYGITVAEFTNKISELRNKLGDKGVKDLGLIVEPELGAEGKISGNVLAGDKNSLAFPRTPERCLGSCTAAAMRPSPAAFIPKAPTGK

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
417	3		96		0.993591
525		4		96	0.99411
526		4	96		0.99411
529	96			4	0.99411
573			9	90	1.0
612		2	8	88	1.0
615	93	6			0.99903
616	90	6		3	0.996531
617		6	93		0.999153
690	90	9			0.999872
1152	11	88			0.999937
1205	87		12		0.999964
1249		83	16		0.999991
1250	16	83			0.999991
1332		50	50		1.0
1352		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain