SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5202

Length: 747 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene5202 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene24542	143/229
SustainPine v2.0	sp_v2.0_unigene60687	83/229
SustainPine v2.0	sp_v2.0_unigene83588	1/229
SustainPine v2.0	sp_v2.0_unigene83601	1/229

Source	Descriptions	Term	Type	Identity
AutoFact	60S ribosomal protein L27a-3 [Arabidopsis thaliana] ref\|XP_002888788.1\| 60S ribosomal protein L27A [Arabidopsis lyrata subsp. lyrata] sp\|P49637.2\|R27A3_ARATH RecName: Full=60S ribosomal protein L27a-3 gb\|AAG52338.1\|AC011663_17 60S ribosomal protein L27A;	-	-	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	protein	-	-	94%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	0.0	94%
Blast2go	membrane	GO:0016020	Cellular Component	0.0	94%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L15, conserved site	IPR001196	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
521		1		95	0.998759
630		2		97	0.999278
695		5		93	1.0
698	7	32	51	1	1.0
699	1	92		6	1.0
700	5	93		1	1.0
718		69		30	1.0
719	15	84			0.999986
720	15	84			0.999986
721		84		15	0.999986
723	7	7	15		0.999985
724	15			84	0.999986

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain