SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5191

Length: 1622 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene5191

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16587	323/330
SustainPine v2.0	sp_v2.0_unigene24953	7/330

Source	Descriptions	Term	Type	Identity
AutoFact	ADP,ATP carrier protein, putative n=1 Tax=Ricinus communis RepID=B9RVW7_RICCO	-	-	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	carrier protein mitochondrial-like	-	-	95%

Source	GOs	Term	Type	e value	Identity
Blast2go	membrane	GO:0016020	Cellular Component	0.0	95%

Source	InterPros	Term	Type	Identity
Sma3		IPR001993	-	-
Sma3	Mitochondrial carrier protein	IPR002067	-	-
Sma3	Adenine nucleotide translocator 1	IPR002113	-	-
Sma3	Mitochondrial substrate/solute carrier	IPR018108	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVC6

Fln msg:

Fln protein: MAERPKYPSVVQKMSYHQTYLGSRITPSWQAHQNGALQPFKYDGALSAPVQSYGGFQSAFLHASRASNVALAPAHSSVFIPAPAEKGFTGFMIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMLKSGRLAEPYKGIGDCFAKTMKDEGVIALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDNKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLTGDLQNNFLASFLLGWGITIGAGLASYPIDTVRRRMMMTSGEAVKYKSSLDAFKQIVQNEGSKSLFKGAGANILRAIAGAGVLAGYDQLQLLLLGKKFGSGGG*

Protein Length: 393

Fln nts: TATCAACGCACGAGTACGATGGGGGGTGTTGGTTATACGAGGAGTTAGGGCTTCTTAGGGCAAAGACGAAGGAGAGGAGCAGCGGTGCGTAATATCTTAAGATCGTGCAGCGGCAGGGCTCCTTCCGTCGGGAGCTCGGCCTCTTTTGGATGCGCCTTGTCTCGTTTGCCAGATATTGAACGGTAAATCTTGACAGGTTAAA_-_ATGGCAGAGCGGCCCAAGTATCCTTCTGTTGTACAGAAGATGTCTTATCATCAAACCTATCTTGGTTCGAGGATTACACCAAGCTGGCAAGCTCACCAGAATGGTGCTCTTCAGCCCTTTAAGTATGATGGAGCATTGTCGGCCCCTGTCCAGAGTTACGGTGGCTTCCAGAGTGCATTTTTGCATGCTTCTCGTGCAAGCAATGTAGCTTTGGCTCCCGCCCATTCATCTGTCTTTATTCCAGCGCCTGCAGAGAAAGGTTTTACTGGTTTCATGATTGACTTTCTCATGGGAGGGGTTTCTGCTGCAGTATCCAAAACTGCAGCTGCCCCTATTGAGCGTGTCAAACTATTGATACAAAACCAGGATGAAATGTTGAAGTCTGGACGTCTTGCTGAACCATACAAAGGGATTGGGGATTGTTTTGCTAAGACAATGAAGGATGAAGGTGTCATTGCGTTATGGAGAGGAAACACTGCAAATGTTATCCGTTATTTTCCCACTCAGGCTTTGAACTTTGCGTTCAAGGATTACTTTAAGAGACTCTTTAATTTCAAGAAAGACAGGGATGGTTACTGGAAATGGTTTGCTGGAAACCTGGCCTCTGGTGGTGCAGCTGGTGCATCTTCTCTCCTTTTTGTTTATTCTTTGGACTATGCTCGAACTCGGCTGGCCAATGATAACAAGGCTGCAAAGAAGGGAGGGGAGAGGCAATTTAATGGGCTTATTGATGTCTACAAGAAAACATTGAAATCTGATGGAATTGCTGGTCTCTATCGTGGGTTCAACATTTCTTGTGTGGGAATTATAGTCTATCGTGGTTTATACTTTGGAATGTATGATTCTCTGAAGCCTGTTGTTTTGACTGGTGATCTTCAGAATAACTTCCTTGCAAGTTTTCTTCTTGGTTGGGGTATTACAATTGGTGCTGGTCTTGCATCGTATCCTATAGATACTGTACGAAGAAGAATGATGATGACTTCCGGTGAGGCAGTTAAGTACAAAAGTTCGTTGGACGCATTTAAACAGATTGTCCAAAACGAAGGTTCCAAGTCACTCTTCAAGGGTGCAGGTGCAAATATCCTCCGTGCTATTGCCGGGGCTGGTGTGTTAGCTGGATATGACCAGTTGCAGTTACTTCTTCTTGGGAAGAAATTTGGCTCTGGCGGTGGCTAA___TATGGATTTGATGATGGTGATAAATATTTAAGACAATGTTTGGACACTAATTTTTAGGATTTTTGGGCCAGGACTCTGGCTCATCTTTTTGAATAATGAGTTTTGGATTATAGTACAATTTTTAGCGGAGTATTGAACTGCATATGAGGTCATCATCTGGAATTTGCAGAGGATAACTCATTGTGCGATGAACAATTTTCTTGATGATGTTGCGGAAGGAAATAATTTTATTCTGATTCCTTAC

Fln Alignment:

Contig5191___MAERPKYPSVVQKMSYHQTYLGSRITPSWQAHQNGALQPFKYDGALSAPVQSYGGFQSAFLHASRASNVALAPAHSSVFIPAPAEKGFTGFMIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMLKSGRLAEPYKGIGDCFAKTMKDEGVIALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDNKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLTGDLQNNFLASFLLGWGITIGAGLASYPIDTVRRRMMMTSGEAVKYKSSLDAFKQIVQNEGSKSLFKGAGANILRAIAGAGVLA
A9NVC6_________________MAERPKYPSVVQKMSC-QTYLGSRITPSWQVRQNGALQPFKYDGALSAPVQSYGGLQSAFLHASRASNVALAPGHSPVFIPAPAEKGFKGFMIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMLKSGRLAEPYKGIGDCFGRTIKDEGFIALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDSKAAKKGGERQFNGLVDVYKKTLKSDGVAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLTGDLQDNFLASFLLGWGITIGAGLASYPIDTVRRRMMMTSGEAVKYKSSLDAFNQIVKNEGTKSLFKGAGANILRAIAGAGVLA

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
1021		88	11		0.999952
1625	66			33	0.997452
1626		66		33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain