SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5186

Length: 2424 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene5186
TATGGGGATTCTCAACGTAGTTTAGACGGACGTGCCTCTTTATATTTTTGGTTCTCTGAGTTCCTTCCAGCGCTGTGCAGTCAGCTTTGCTGCGATTATTGTTCTATTTTTTGTTTTCTGAGCATTCAACGGTTTTCTATTTTGGAAAATGGCAAAGGGAGAAGGCCCCGCTATCGGAATCGATCTTGGAACCACATATTCCTGCGTAGGAGTGTGGCAACATGACCGAGTGGAGATTATTGCCAACGATCAGGGAAATCGGACCACTCCATCTTATGTAGCTTTCACCGACACAGAGCGGCTGATCGGAGATGCTGCCAAAAATCAAGTTGCCATGAATCCCACCAACACAGTTTTCGATGCAAAGCGTCTTATTGGAAGGAGATTCTCCGATCCAACAGTCCAGAATGACATGAAGTTGTGGCCCTTCAAAGTCATTTCTGGGCCAGCGGAGAAGCCTATGATTGTTGTTACTTACAAAGGAGAAGAAAAGCAATTCGCTGCAGAGGAAATTTCTTCGATGGTTCTGACTAAAATGAAAGAGATTGCTGAAGCGTATCTTGGAACCACCATCAAGAATGCTGTTGTTACAGTCCCTGCATATTTCAATGACTCTCAGAGGCAGGCTACAAAGGATGCTGGCGTCATTTCTGGACTAAATGTGATGAGAATCATCAACGAACCAACTGCAGCTGCAATTGCTTATGGGCTGGACAAGAAGGCTAGCTCTGTTGGTGAGAAAAATGTTTTGATTTTTGATCTAGGAGGGGGGACTTTTGATGTTTCTCTATTAACTATTGAAGAGGGTATCTTTGAGGTCAAGGCCACGGCAGGAGATACCCATTTGGGTGGTGAAGACTTTGATAATCGGTTAGTTAACCATTTTACTCAGGAATTTAAAAGAAAATATAAGAAAGATCTCGGTAGCAGTGCAAGAGCCCTTAGGAGGTTGAGAACAGCCTGTGAAAGGGCTAAGAGAACGTTGTCTTCCACTGCTCAGACTACCATTGAGATTGATTCTTTGTACGAAGGAATTGATTTTTACTCCACCATTACTAGGGCTAGATTTGAGGAGCTCAACATGGATCTGTTTAGGAAATGCATGGAGCCTGTTGAGAAGTGTTTGAGGGATGCCAAGATGGATAAGAGCAGTGTTCATGATGTTGTGCTTGTGGGAGGATCTACCCGTATCCCTAAAGTGCAGCAATTGTTGCAGGATTTCTTCAATGGAAAGGAGCTCTGCAAGAGTATCAATCCCGATGAAGCTGTCGCTTATGGTGCTGCTGTTCAAGCTGCAATTCTAAGTGGAGAAGGAAATGAGAAGGTGCAAGACCTTTTGCTTCTTGACGTTACTCCCCTGTCACTAGGATTGGAAACTGCGGGAGGAGTGATGACTGTTTTGATCCCGAGGAACACAACGATTCCTACGAAAAAAGAACAAGTCTTCTCCACATACTCTGACAATCAGCCTGGTGTTTTGATCCAAGTATTTGAAGGTGAAAGAGCAAGAACTAAGGACAACAATCTTTTGGGTAAGTTTGAGTTGTCTGGTATCCCTCCTGCTCCAAGGGGTGTGCCTCAGATCACTGTTTGCTTTGACATTGATGCCAATGGTATCCTGAACGTCTCTGCTGAGGATAAAACGACTGGGCAGAAAAACAAGATCACCATTACCAATGACAAGGGCAGGCTAAGCAAGGATGAGATAGAAAAGATGGTTCAGGATGCAGAGAAATACAAGGCCGAGGATGAAGAACTGAAATTGAAGGTAGAAGCCAAAAATTCTCTAGAGAACTATGCATACAACATGAGGAATACCATCAAAGATGATAAGATTGCAGGAAAGTTGGACCCTGCTGACAAGAAGAAAATCGAGGATGCAGTTGATGGAATTATCAGCTGGTTGGATGGAAACCAGTTGGCCGAGAAGGAAGAGTTTGAGGACAAATTGAAAGAGCTGGAGTCTACTTGCAATCCTATCATTGCAAAAATGTACCAGGGTGAAGGTGGTGCGGGATTTCCAGGTGCTGATGCTTTTGGTGGAGCTTCTGGAGCTGGCGACGAGGGTGCAAGTGGCCCTGGTCCCAAGATCGAGGAAGTGGACTAGATATATTTCTTCAGCACCTTCTATGTGTTTTTTTTGTTATTTCATTTGAATTGCTCGGGCTGGAATTTTAGAACTTTAAAATGTGGCCATTTTTGTCAGCCTCAGGATTGTTTCTCTTTGTAGTAGGTATGTAGTATTTTGAACTCTCTTATGCAGAGAGTCGTCAAACCGTATATTTCAACTGAAAGTGTTTTGTCATTTCAGAATATCTAGAAATATAATGCGCCCGGATTTTTACTGGCTGTTTGAGTTGTGCTATACACATTTTGGTTCGTTCCGTGGCATTTATTAAATCTATAGCATCGTTTCCAATGATT

Ace file of the UniGene biog2_v2.0_unigene5186 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16232	21/522
SustainPine v2.0	sp_v2.0_unigene22760	497/522
SustainPine v2.0	sp_v2.0_unigene82743	3/522

Source	Descriptions	Term	Type	Identity
AutoFact	Heat shock cognate 70 kDa protein n=7 Tax=Magnoliophyta RepID=HSP7C_PETHY	-	-	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	heat shock protein 70	-	-	96%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein 70, conserved site	IPR018181	-	-
Sma3	Heat shock protein Hsp70	IPR001023	-	-
Sma3	Heat shock protein 70	IPR013126	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRY5

Fln msg:

Fln protein: MAKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDPTVQNDMKLWPFKVISGPAEKPMIVVTYKGEEKQFAAEEISSMVLTKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQATKDAGVISGLNVMRIINEPTAAAIAYGLDKKASSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFTQEFKRKYKKDLGSSARALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVFEGERARTKDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKDEIEKMVQDAEKYKAEDEELKLKVEAKNSLENYAYNMRNTIKDDKIAGKLDPADKKKIEDAVDGIISWLDGNQLAEKEEFEDKLKELESTCNPIIAKMYQGEGGAGFPGADAFGGASGAGDEGASGPGPKIEEVD*

Protein Length: 654

Fln nts: TATGGGGATTCTCAACGTAGTTTAGACGGACGTGCCTCTTTATATTTTTGGTTCTCTGAGTTCCTTCCAGCGCTGTGCAGTCAGCTTTGCTGCGATTATTGTTCTATTTTTTGTTTTCTGAGCATTCAACGGTTTTCTATTTTGGAAA_-_ATGGCAAAGGGAGAAGGCCCCGCTATCGGAATCGATCTTGGAACCACATATTCCTGCGTAGGAGTGTGGCAACATGACCGAGTGGAGATTATTGCCAACGATCAGGGAAATCGGACCACTCCATCTTATGTAGCTTTCACCGACACAGAGCGGCTGATCGGAGATGCTGCCAAAAATCAAGTTGCCATGAATCCCACCAACACAGTTTTCGATGCAAAGCGTCTTATTGGAAGGAGATTCTCCGATCCAACAGTCCAGAATGACATGAAGTTGTGGCCCTTCAAAGTCATTTCTGGGCCAGCGGAGAAGCCTATGATTGTTGTTACTTACAAAGGAGAAGAAAAGCAATTCGCTGCAGAGGAAATTTCTTCGATGGTTCTGACTAAAATGAAAGAGATTGCTGAAGCGTATCTTGGAACCACCATCAAGAATGCTGTTGTTACAGTCCCTGCATATTTCAATGACTCTCAGAGGCAGGCTACAAAGGATGCTGGCGTCATTTCTGGACTAAATGTGATGAGAATCATCAACGAACCAACTGCAGCTGCAATTGCTTATGGGCTGGACAAGAAGGCTAGCTCTGTTGGTGAGAAAAATGTTTTGATTTTTGATCTAGGAGGGGGGACTTTTGATGTTTCTCTATTAACTATTGAAGAGGGTATCTTTGAGGTCAAGGCCACGGCAGGAGATACCCATTTGGGTGGTGAAGACTTTGATAATCGGTTAGTTAACCATTTTACTCAGGAATTTAAAAGAAAATATAAGAAAGATCTCGGTAGCAGTGCAAGAGCCCTTAGGAGGTTGAGAACAGCCTGTGAAAGGGCTAAGAGAACGTTGTCTTCCACTGCTCAGACTACCATTGAGATTGATTCTTTGTACGAAGGAATTGATTTTTACTCCACCATTACTAGGGCTAGATTTGAGGAGCTCAACATGGATCTGTTTAGGAAATGCATGGAGCCTGTTGAGAAGTGTTTGAGGGATGCCAAGATGGATAAGAGCAGTGTTCATGATGTTGTGCTTGTGGGAGGATCTACCCGTATCCCTAAAGTGCAGCAATTGTTGCAGGATTTCTTCAATGGAAAGGAGCTCTGCAAGAGTATCAATCCCGATGAAGCTGTCGCTTATGGTGCTGCTGTTCAAGCTGCAATTCTAAGTGGAGAAGGAAATGAGAAGGTGCAAGACCTTTTGCTTCTTGACGTTACTCCCCTGTCACTAGGATTGGAAACTGCGGGAGGAGTGATGACTGTTTTGATCCCGAGGAACACAACGATTCCTACGAAAAAAGAACAAGTCTTCTCCACATACTCTGACAATCAGCCTGGTGTTTTGATCCAAGTATTTGAAGGTGAAAGAGCAAGAACTAAGGACAACAATCTTTTGGGTAAGTTTGAGTTGTCTGGTATCCCTCCTGCTCCAAGGGGTGTGCCTCAGATCACTGTTTGCTTTGACATTGATGCCAATGGTATCCTGAACGTCTCTGCTGAGGATAAAACGACTGGGCAGAAAAACAAGATCACCATTACCAATGACAAGGGCAGGCTAAGCAAGGATGAGATAGAAAAGATGGTTCAGGATGCAGAGAAATACAAGGCCGAGGATGAAGAACTGAAATTGAAGGTAGAAGCCAAAAATTCTCTAGAGAACTATGCATACAACATGAGGAATACCATCAAAGATGATAAGATTGCAGGAAAGTTGGACCCTGCTGACAAGAAGAAAATCGAGGATGCAGTTGATGGAATTATCAGCTGGTTGGATGGAAACCAGTTGGCCGAGAAGGAAGAGTTTGAGGACAAATTGAAAGAGCTGGAGTCTACTTGCAATCCTATCATTGCAAAAATGTACCAGGGTGAAGGTGGTGCGGGATTTCCAGGTGCTGATGCTTTTGGTGGAGCTTCTGGAGCTGGCGACGAGGGTGCAAGTGGCCCTGGTCCCAAGATCGAGGAAGTGGACTAG___ATATATTTCTTCAGCACCTTCTATGTGTTTTTTTTGTTATTTCATTTGAATTGCTCGGGCTGGAATTTTAGAACTTTAAAATGTGGCCATTTTTGTCAGCCTCAGGATTGTTTCTCTTTGTAGTAGGTATGTAGTATTTTGAACTCTCTTATGCAGAGAGTCGTCAAACCGTATATTTCAACTGAAAGTGTTTTGTCATTTCAGAATATCTAGAAATATAATGCGCCCGGATTTTTACTGGCTGTTTGAGTTGTGCTATACACATTTTGGTTCGTTCCGTGGCATTTATTAAATCTATAGCATCGTTTCCAATGATT

Fln Alignment:

Contig5186___MAKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDPTVQNDMKLWPFKVISGPAEKPMIVVTYKGEEKQFAAEEISSMVLTKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQATKDAGVISGLNVMRIINEPTAAAIAYGLDKKASSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFTQEFKRKYKKDLGXXXXXXXXXRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXAILSGEGNEKVQDXXXXXXXXXXXXLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVFEGERARTKDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKDEIEKMVQDAEKYKAEDEELKLKVEAKNSLENYAYNMRNTIKDDKIAGKLDPADKKKIEDAVDGIISWLDGNQXXXXXXXXXXXXXXESTCNPIIAKMYQXXXXXXXXXXXXXXXXXXXXXXXXXXXGPKIEEVD
B8LRY5_________________MAKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDPTVQNDMKLWPFKVISGPAEKPMIVVSYKGEDKQFAAEEISSMVLTKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQATKDAGVISGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFTQEFKRKYKKDLSSSARALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTIHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVFEGERARTKDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKDEIEKMVQDAEKYKAEDEELKLKVEAKNSLENYAYNMRNTIRDDKIAGKLDPADKKKIEDAVDGIISWLDGNQLAEKEEFEDKLKELESTCNPIIAKMYQGEGGAGFPGADAFGGASGAGDESASGPGPKIEEVD

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
632		20		80	0.995493
1774		22	77		0.999999
1775	77	22			0.999999
1776	80	20			0.999996
1785	14		85		0.993533
2118		4	95		0.99692
2217		3		96	0.991825
2219		96		3	0.99245
2413	92	7			0.999664
2414		7	92		0.999664
2415	92	7			0.999664

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain