SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5178

Length: 745 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene5178 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5254	1/438
SustainPine v2.0	sp_v2.0_unigene15767	205/438
SustainPine v2.0	sp_v2.0_unigene60205	224/438
SustainPine v2.0	sp_v2.0_unigene81627	5/438
SustainPine v2.0	sp_v2.0_unigene83064	1/438

Source	Descriptions	Term	Type	Identity
AutoFact	Non-specific lipid-transfer protein n=4 Tax=Pinus RepID=NLTP_PINTA	-	-	93%
FL-Next	sp=Non-specific lipid-transfer protein; Pinus taeda (Loblolly pine).	-	-	93%
Blast2go	nonspecific lipid-transfer protein 2 precursor	-	-	79%

Source	InterPros	Term	Type	Identity
Sma3	Plant lipid transfer protein/hydrophobic protein helical domain	IPR013770	-	-
Sma3		IPR003612	-	-
Sma3	Plant lipid transfer protein/Par allergen	IPR000528	-	-

Full-Lengther Next Prediction

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
341		90		10	0.90298
660		1		94	1.0
695	98	1			0.989132
701	98			1	0.991052
716		2	97		1.0
717	97	2			0.999983
718		0		97	0.917344
721	97	0		2	0.999845
722	97			0	0.999882
732		1	90		1.0
734	52	1			1.0
738	3	96			0.999825
739	4	92		3	0.999982
742	25		75		1.0
743	14			85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain