SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5174

Length: 474 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene5174
ATGGGGGGTAATGGGATCTCGCTCCTTGGAAGGCATTGGGAATCGTCGAGATCAGATCAGTCACACGGCGACCACTACAGCAATGATTCTTTGCCCTCGCCCTCTGCTCTGGGTACTTATAATATTTGTCTCCGCAGCAACTCTCACAGAGGGAGCTGTGGCACAGTGGTGTATAGCAGATCCACAGGCACCTGATGACATGTTGCAGAGCGCACTGGATTGGGTATGCGGTTACGGAGGAGCAGACTGCAGCAAAATACAGCCCAACCAAGAGTGCTTCTTGCCAGAAAGTCTGGCCTCCCATGCCTCCATTGCGTTCAACAGTTACTGGCAGAAGTTGAAGCATCAAGGGCTTCCTGTTATTTCGATTCTGCAGCTCTCGTCTCTGAAAGCGATCCAAGCCACGATGGGTGTGAGTACGATTTTGTTCCATAAACATTAATCCACATGATATATGGGAGGGCAGCAATAGCA

Ace file of the UniGene biog2_v2.0_unigene5174 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23374	10/12
SustainPine v2.0	sp_v2.0_unigene63679	2/12

Source	Descriptions	Term	Type	e value	Identity
AutoFact	carbohydrate-binding X8 domain-containing protein [Arabidopsis thaliana] dbj\|BAB09273.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAM61369.1\| unknown [Arabidopsis thaliana] gb\|ABD59063.1\| At5g35740 [Arabidopsis thaliana] gb\|AED94013.1\| carbohydra	-	-	2.0e-27	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	carbohydrate-binding x8 domain-containing protein	-	-	0.0	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	X8	IPR012946	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NSB1

Fln msg: Overlapping hits, possible frame ERROR between 352 and 352,

Fln protein: MGSRSLEGIGNRRDQISHTATTTAMILCPRPLLWVLIIFVSAATLTEGAVAQWCIADPQAPDDMLQSALDWVCGYGGADCSKIQPNQECFLPESLASHASIAFNSYWQKLKHQxxSCYFDSAALVSESDPSHDGCEYDFVP*

Protein Length: 143

Fln nts: ATGGGGGGTA_-_ATGGGATCTCGCTCCTTGGAAGGCATTGGGAATCGTCGAGATCAGATCAGTCACACGGCGACCACTACAGCAATGATTCTTTGCCCTCGCCCTCTGCTCTGGGTACTTATAATATTTGTCTCCGCAGCAACTCTCACAGAGGGAGCTGTGGCACAGTGGTGTATAGCAGATCCACAGGCACCTGATGACATGTTGCAGAGCGCACTGGATTGGGTATGCGGTTACGGAGGAGCAGACTGCAGCAAAATACAGCCCAACCAAGAGTGCTTCTTGCCAGAAAGTCTGGCCTCCCATGCCTCCATTGCGTTCAACAGTTACTGGCAGAAGTTGAAGCATCAAxxxxxxTCCTGTTATTTCGATTCTGCAGCTCTCGTCTCTGAAAGCGATCCAAGCCACGATGGGTGTGAGTACGATTTTGTTCCATAA___ACATTAATCCACATGATATATGGGAGGGCAGCAATAGCA

Fln Alignment:

Contig5174___ATTTAMILCPRPLLWVLIIFVSAATLTEGAVAQWCIADPQAPDDMLQSALDWVCGYGGADCSKIQPNQECFLPESLASHASIAFNSYWQKLKHQGASCYFDSAALVSESDPSHDGCEYDFV
A9NSB1_________________ATTTATILWPLPLLLVLMIFVSAANLTEGAVAQWCIADPQAPDDMLQSALDWVCGYGGADCSKTQPNQECFLPDNLASHASIAFNSYWQKLKHQGASCYFDSAALVTESDPSHDGCEYDFV

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
81		66		33	0.997452
288		88		11	0.923564
292		33		66	1.0
355		33		66	1.0
356	66		33		1.0
365	33	66			1.0
377		75		25	1.0
382		37	62		1.0
395		11	88		0.923564
397		11		88	0.923564
398	11		88		0.923564
405		12		87	0.992554
412		12	87		0.992554
413		12		87	0.992554
414		12	87		0.992554
416	12	87			0.992554
418		14	85		0.993533
419	85	14			0.993533
420		14		85	0.993533
462	33	66			0.997452
463	33	33			0.997753
464	33	66			0.997452
466	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain