SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5163

Length: 299 nt

UniGene Fasta

>biog2_v2.0_unigene5163
ATGGGGCCGGCACCCAACTCAACTGGAGATCAGGTCCACTGCGTCCCATTCTTTTACTAGTTGGCCCTTTATTCGCTACAGAACGAGGCGAGGCGAGGCGAGGCCTGTCTTGGATTGGTCTAAAAAATGGCGTTTCCCTATTTGGAAGCTGTTGTTGGTTTCATGATCTTCATGTACTTCATTGAGACATACCTTGACTTGAGGCAACATACGTCACTTAAGCTTCCTCATCTGCCTAAGCCTTTAAAAGGAGTGGTGAGTCAGGATAAGTTTGAAAAATCTCGAGCTTACAGCATTGA

Ace file of the UniGene biog2_v2.0_unigene5163

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22106	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	CAAX prenyl protease 1-like protein [Arabidopsis thaliana] sp\|Q8RX88.1\|FACE1_ARATH RecName: Full=CAAX prenyl protease 1 homolog; AltName: Full=Farnesylated proteins-converting enzyme 1; Short=AtFACE-1; Short=FACE-1; AltName: Full=Prenyl protein-specific e	-	-	73%
FL-Next	sp=CAAX prenyl protease 1 homolog; Arabidopsis thaliana (Mouse-ear cress).	-	-	73%
Blast2go	caax prenyl protease 1 homolog	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	87%
Blast2go	CAAX-box protein maturation	GO:0080120	Biological Process	87%
Blast2go	endopeptidase activity	GO:0004175	Molecular Function	87%
Blast2go	vacuole	GO:0005773	Cellular Component	87%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase M48	IPR001915	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q8RX88

Fln msg: Distance to subject end: 366 aas, your sequence is shorter than subject: 57 - 424

Fln protein: MAFPYLEAVVGFMIFMYFIETYLDLRQHTSLKLPHLPKPLKGVVSQDKFEKSRAYSI

Protein Length: 58

Fln nts: ATGGGGCCGGCACCCAACTCAACTGGAGATCAGGTCCACTGCGTCCCATTCTTTTACTAGTTGGCCCTTTATTCGCTACAGAACGAGGCGAGGCGAGGCGAGGCCTGTCTTGGATTGGTCTAAAAA_-_ATGGCGTTTCCCTATTTGGAAGCTGTTGTTGGTTTCATGATCTTCATGTACTTCATTGAGACATACCTTGACTTGAGGCAACATACGTCACTTAAGCTTCCTCATCTGCCTAAGCCTTTAAAAGGAGTGGTGAGTCAGGATAAGTTTGAAAAATCTCGAGCTTACAGCATTGA

Fln Alignment:

Contig5163___MAFPYLEAVVGFMIFMYFIETYLDLRQHTSXXXXXXXXXXXGVVSQDKFEKSRAYSI
Q8RX88_________________MAIPFMETVVGFMIVMYIFETYLDLRQLTALKLPTLPKTLVGVISQEKFEKSRAYSL

SSRs (tot: 1)

Start position	End position	Sequence	Length
84	104	CGAGG CGAGG CGAGG CGAGG C	21

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain