SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5162

Length: 1206 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene5162 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23531	45/45

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Lactoylglutathione lyase, putative n=1 Tax=Ricinus communis RepID=B9SKE3_RICCO	-	-	1.96182e-44	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Blast2go	metallothiol transferase fosb	-	-	0.0	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glyoxalase/fosfomycin resistance/dioxygenase	IPR004360	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NN94

Fln msg:

Fln protein: MGKEEVQISRPSPLPLLSLNHVSFVCKSVAASTKFYETILGFQVVKRPASFDFEGVWLFNYGVGIHLLQCKPWDDIPKKSEINPRDNHISFQCPDIVSVEKNLQELKIKYEKRVVEDEGLFVNQLFIHDPDGYMVEICNCENLPVIPLSLPPYSVKSSSLGFDQKRESRSEIDIVPTIAAAQKDFLNRKKMIEATGRENRFPSKAHDKMPFFLDIIDFYL*

Protein Length: 222

Fln nts: ATGGGGCTGCCTGCGCTTTCTGGAGAACAAGCCAAGACTGTGAGGAAGCAGGTAGAGGTAGAGTTGATCCATCAGTCCATGGGAATGCTGGAGAAGTAAAGAAAAAGGAATCGCAGGATACG_-_ATGGGAAAAGAAGAAGTTCAGATTTCACGTCCCTCCCCATTACCTTTGTTATCTCTGAATCACGTTTCATTCGTTTGTAAATCTGTGGCGGCTTCCACCAAATTCTATGAGACTATTCTTGGATTCCAGGTTGTGAAGAGGCCAGCTTCATTCGATTTTGAAGGAGTTTGGTTATTCAATTACGGTGTGGGGATTCATCTGTTGCAGTGCAAGCCTTGGGATGATATTCCTAAAAAATCAGAGATCAATCCCAGAGATAACCATATCTCTTTTCAGTGCCCAGATATTGTTTCAGTGGAAAAGAATCTCCAAGAATTGAAAATAAAATATGAAAAGCGTGTAGTGGAGGATGAAGGCCTGTTCGTGAACCAACTTTTCATTCATGATCCTGACGGTTACATGGTCGAGATCTGCAACTGTGAGAATCTCCCTGTTATTCCCCTCTCTCTCCCGCCATATTCTGTAAAGTCAAGCTCTTTGGGTTTTGATCAAAAGAGAGAGAGCCGCTCAGAAATCGATATTGTTCCAACCATTGCTGCTGCACAAAAGGACTTTCTGAATCGAAAAAAGATGATTGAAGCCACTGGACGAGAGAATCGGTTCCCATCAAAGGCACATGATAAAATGCCATTTTTCCTGGACATCATAGATTTCTATCTCTGA___AGGCAGCCACAGCCATAGATTAGTAGAGATACTAGGGGACGCACAGTTTGGTTCTGTGATCTGTTATGCTACTGGTATTTAGTAATTACTGGGCGATTTCCTCCCTCTGGACGTGCAAGGAATTTGGCTAAAACTTTTATAAGTTTGTAGTCTTTGAAATAATCACGAGGTTGTTTTAAGTTAGTAGTCTTTGAAATAATCACTAGTTTTAGTATTGTTTGTGTGGTATTTCATAATTCCCATGTTTTGGGGGCTCTGAATGCTGAGTCAGGGGTGGCTTACTATTTAAGGTTGTGTGTAATTTGTTGTGCATCAGTTGGAACTTTCTAATATGCTGCTTTCCAACTGTAATGCAACGGGCATTTTAATGCTGCTGCTGTTTCATAAAATTTCCAGAAATTTCAAAACGTTCCAGTGAACG

Fln Alignment:

Contig5162___MGKEEVQIXXXXXXXXXXLNHVSFVCKSVAASTKFYETILGFQVVKRPASFDFEGVWLFNYGVGIHLLQCKPWDDIPKKSEINPRDNHISFQCPDIVSVEKNLQELKIKYEKRVVEDEGLFVNQLFIHDPDGYMVEICNCENLPVIPLSLPPYSVKSSSLGFDQKRESRSEIDIVPTIAAAQKDFLNRKKMIEATGRENRFPSKAHDKMPFFLDIIDFYL
A9NN94_________________MGKEEVQISRPSPLPLLSLNHVSFVCKSVKASTKFYETILGFQVVKRPSSFDFEGVWLFNYGVGIHLLQCKPSDDIPKKSVINPRDNHISFQCPDIFSVESKLQELDIKYEKRIVEDDGLFVNQLFFHDPDGYMVEICNCENLPVIPLKLV---------------QSRSEIDIVPTL---RKEFRNRKKEI---GRENGFPSKALDKMPIFLDIIDFYL

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
533	87		12		0.992554
549	88		11		0.923564
643	85			14	0.993533
667		88		11	0.923564
695	10	90			0.90298
1074		11		88	0.923564
1075		11		88	0.923564
1077	14			85	0.993533
1078	14			85	0.993533
1185		40	60		1.0
1186		40		60	1.0
1188	80	20			0.995493
1189	20	20	60		0.99255
1192	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain