SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5145

Length: 1514 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene5145

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3412	44/45
SustainPine v2.0	sp_v2.0_unigene17484	1/45

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA-binding protein [Medicago truncatula]	-	-	5.0e-20	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Blast2go	protein	-	-	0.0	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	0.0	65%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	0.0	65%

Source	InterPros	Term	Type	e value	Identity
Sma3	RNA recognition motif domain	IPR000504	-	0.0	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AC97

Fln msg:

Fln protein: MDRYERPGYGRDAPPPGRRSPPGYQYYQGRERELDSYGPPHMEGRDLLSAGRERELDPYGPPRMEGRDLLSAGRDHQLDPYGPAQTDRRDLLSSGREHDLDSYRTRMEGRDLLSSGREHDLHSYRPRIDSRDLISSVRDHELDSYRPLRTEGRALLPSERHYDDRDRDRDIPALSAGWRERDPLAGGRDLLRDKTINGTGGMHPNDFGGTIPGVGFKRVAIDSFDDTSLIGSGSRFDRGMGSLQEPLGRDEHGRDVAPTGGGADSAREPVLFIDGLPLDCTSREAAHIFRPFIGYKEVRIVHKEPKKPGGEKTLLCFVEFNDLRHAAIAREALQGYKFDEQDPNSGTLRISFSLYSSRKGSHHEEPRGGRYPNRGYRA*

Protein Length: 380

Fln nts: GCGATATCTTGTTTCTGATTTTCACTTGAGGGAGACGAAGAAAACTGTCATTCTGCTGTGACATTGTGAGAGTAGAAGCGAAAGGCA_-_ATGGACCGCTATGAGCGGCCTGGCTATGGTAGAGACGCTCCCCCTCCTGGTAGAAGGTCTCCACCCGGTTACCAATACTATCAAGGAAGAGAACGCGAACTTGATTCCTATGGACCTCCTCACATGGAAGGACGTGATTTGCTGTCTGCAGGAAGAGAACGTGAACTTGACCCCTATGGACCTCCTCGTATGGAAGGGCGTGATTTACTATCTGCAGGTAGAGATCATCAACTTGATCCTTATGGACCTGCTCAAACAGACAGACGTGATTTACTATCCTCAGGCAGAGAACATGATCTTGACTCCTATAGAACTCGAATGGAGGGACGAGATTTATTATCTTCAGGCAGAGAACATGATCTTCACTCCTATAGGCCTCGAATAGACAGTCGAGATTTAATATCCTCAGTCAGAGATCATGAACTTGACTCCTATAGGCCTCTTCGCACAGAGGGACGGGCTTTATTGCCTTCAGAACGACACTATGATGATCGTGATCGCGATCGTGACATTCCTGCTCTTTCTGCTGGTTGGAGAGAGCGGGATCCTCTTGCAGGTGGCAGAGATTTATTAAGAGACAAGACTATCAATGGAACAGGTGGGATGCATCCAAATGATTTTGGAGGAACCATCCCTGGTGTTGGATTCAAGAGGGTTGCCATTGATAGCTTTGATGATACATCTCTGATCGGTTCAGGCTCACGATTTGATAGAGGCATGGGTAGCCTGCAGGAGCCTCTTGGTCGTGATGAACATGGTCGGGATGTTGCACCCACAGGTGGAGGTGCAGATTCTGCTCGAGAACCAGTACTGTTTATTGATGGACTTCCTTTAGATTGCACCAGTAGAGAAGCAGCTCATATCTTTCGTCCATTTATTGGATACAAAGAGGTGCGAATTGTCCATAAGGAGCCTAAAAAGCCTGGAGGAGAAAAGACCCTCCTATGCTTTGTTGAATTTAATGACTTAAGGCATGCTGCTATTGCTCGAGAGGCTTTACAGGGGTATAAATTTGATGAACAAGACCCCAATTCTGGGACTTTACGGATATCATTTTCACTATATTCTAGTCGCAAAGGTTCTCATCATGAGGAGCCACGAGGTGGACGCTATCCTAATCGTGGTTACAGGGCTTGA___TTTGTCCCACTGTAAATGTCTCTTTAATGGTTGAACTTCTGAAAGATGCAGCGCACAAACAATACTTGCAAAACATATAGATTTATGACATGAATAACATATATTGCCATTTAGCACATTGGAGGTGACTGCACTAGCTGCTGGTTACTTCAGGTATCTGTTGGATATTCCCTCTACCTTCCGTTTGTCTCTTTAAAAACTAAGAGTGTGATGACCTTCGTGTCGGGCCTCATTTTGGTACACGGGGATGTTTATTTTTATTTAATTGTGAGTTTAGACATTAGTAGAAG

Fln Alignment:

Contig5145___MDRYERPGYGRDAPPPGRRSPPGYQYYQGRERELDSYGPPHMEGRDLLSAGRERELDPYGPPRMEGRDLLSAGRDHQLDPYGPAQTDRRDLLSSGREHDLDSYRTRMEGRDLLSSGREHDLHSYRPRIDSRDLISSVRDHELDSYRPLRTEGRALLPSERHYXXXXXXXXIPALSAGWRERDPLAGGRDLLRDKTINGTGGMHPNDFGGTIPGVGFKRVAIDSFDDTSLIGSGSRFDRGMGSLQEPLGRDEHGRDVAPTGGGADSAREPVLFIDGLPLDCTSREAAHIFRPFIGYKEVRIVHKEPKKPGGEKTLLCFVEFNDLRHAAIAREALQGYKFDEQDPNSGTLRISFSLYSSRKGSHHEE
D5AC97_________________MDHYERPGYGRDAAPASRRSPVGYQYYNGRERELDPYGAPHMEGRDLLSAGRERELDPYGPPRMEGRDLLSAGRDHQLDPYGPAQIDRRDLFSSGREHDLDSYGTRMEGRDLLSSGRERDLDSYRPRLEGRDLLSSGRDHELDSYRSLRTDGRALLSSERHYDDRDRD--IPAVSAGWRERDPLIGGRDLFRDKTINGTGGMHANDFEGTVLGIGSKRVHSASFDDTSLIGSGSRFDRGMGSLQGSLGRDGHGRDIALTGGGADSAREPVLFIDGLPLDCTVREAAHIFRPFIGFKEVRVVHKEPKRPGGEKSVLCFVEFTDLRHAAIAREALQGYKVDEHDPNSGTLRISFSLYSSRKGSHHEE

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
42	66		33		0.997452
286	16		83		0.999991
530		88		11	0.999937
745		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain