SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5135

Length: 784 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene5135 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22632	20/20

Source	Descriptions	Term	Type	Identity
AutoFact	V-type proton ATPase catalytic subunit A n=36 Tax=Magnoliophyta RepID=VATA_ARATH	-	-	89%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	v-type proton atpase catalytic subunit a	-	-	94%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal	IPR000793	-	-
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal	IPR004100	-	-
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	ATPase, V1 complex, subunit A	IPR005725	-	-

Full-Lengther Next Prediction

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
141	66		33		0.997452
400		80		20	0.995493
701		20		80	0.995493
702	20	80			0.995493
703		80		20	0.995493
716		33		66	0.997452
720		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain