SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5134

Length: 1288 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene5134

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16322	1/42
SustainPine v2.0	sp_v2.0_unigene17472	2/42
SustainPine v2.0	sp_v2.0_unigene32908	39/42

Source	Descriptions	Term	Type	Identity
AutoFact	Proteasome subunit alpha type n=3 Tax=Picea sitchensis RepID=A9NWU0_PICSI	-	-	92%
FL-Next	sp=Proteasome subunit alpha type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	protein	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	response to arsenic-containing substance	GO:0046685	Biological Process	84%
Blast2go	plasma membrane	GO:0005886	Cellular Component	84%
Blast2go	proteasome complex	GO:0000502	Cellular Component	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	0.0	-
Sma3	Proteasome, alpha-subunit, N-terminal domain	IPR000426	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LP35

Fln msg:

Fln protein: MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAVGLRSKTHVVLVSVAKANSEFSSYQKKIFKVDDHIGVAIAGLTADGRVLSLHMRSECIHYKFLYDSPLPVGRLVVQLADKAQVCTQRSWTRPYGVGLLVAGLDETGPHLYQNCPSGNYFEYQAFAIGARSQAAKTYLERKFETFPECSRDELIRHGIISVREALAEGKLNGSNCNVAVLGIGEAFNTLDSKTVQQIIDSLEDRTDEPPVDVAPVEGEQEAVQDDTDQAVAPMET*

Protein Length: 271

Fln nts: GTTGCACAAAATGGAGTGTTTTACACAAGTACAAAGCCCTTAAGAGTATATGAAGCCAGAGGAGGAAGCGCATGCTGGGAGCGAAATTTAGAGAAGTATCTGCGACATTTGATATCGAACCCAGTCAGTTTGCGGCATAGATCTAACGCAAATATAAGAGAAG_-_ATGTTCAGGAACCAGTATGATACTGATGTGACCACATGGAGCCCTGCAGGGAGGCTGTTCCAGGTGGAATATGCAATGGAGGCAGTGAAGCAGGGCAGTGCTGCAGTTGGGCTGAGATCCAAAACTCATGTTGTGTTGGTGAGTGTGGCCAAGGCTAATTCTGAGTTCTCGTCCTACCAGAAAAAGATTTTCAAGGTGGATGATCACATAGGGGTGGCAATTGCAGGACTTACTGCAGATGGGCGTGTGCTATCTCTTCACATGCGGTCTGAGTGCATCCATTACAAATTCTTGTATGATTCACCCCTTCCCGTTGGCCGATTGGTGGTGCAGCTTGCAGACAAGGCGCAGGTCTGCACACAGAGGTCTTGGACACGACCATATGGTGTGGGTCTACTTGTGGCTGGATTAGATGAAACAGGACCCCATCTTTATCAGAATTGCCCTTCTGGAAATTATTTTGAGTATCAAGCATTTGCCATTGGTGCTCGCTCCCAAGCAGCAAAAACTTACTTAGAAAGGAAGTTTGAGACATTCCCAGAGTGCTCACGTGATGAACTTATTCGTCATGGGATTATTTCAGTCAGGGAAGCATTAGCAGAAGGAAAACTGAATGGTTCTAATTGCAATGTCGCTGTTCTTGGAATTGGTGAGGCATTCAACACTCTTGACTCCAAAACAGTACAACAGATTATTGACTCACTGGAAGATAGGACAGATGAACCTCCAGTAGATGTGGCTCCAGTTGAAGGTGAACAAGAAGCTGTTCAAGATGATACAGATCAAGCTGTAGCCCCCATGGAGACCTAA___TTTTGGGAAGTCATTTGTTTAGATTATATGACCTATTCCATTTAGGAAGAAGCAGGCGAGGAAGAAAGCTTCAAATGTTAGGGTGAATTATGGTATGACAAGATTTTCTGATTATTTTATCCTGTTAGTTGCTGGACTTGTCTCTACAAGTATAATACTATACATTATCATGATAAATTTCTTGTTGGTTTGCATTTTGATATCTTTACCGATTCCACATGGTGACATTTCCAGTATAGATATTAAAGCGTTTGGAGGTTTCTCTTAAATCACCATGTTATTGAAATACTAAATACTTCCATTTACTATGCTATC

Fln Alignment:

Contig5134___MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAVGLRSKTHVVLVSVAKANSEFSSYQKKIFKVDDHIGVAIAGLTADGRVLSLHMRSECIHYKFLYDSPLPVGRLVVQLADKAQVCTQRSWTRPYGVGLLVAGLDETGPHLYQNCPSGNYFEYQAFAIGARSQAAKTYLERKFETFPECSRDELIRHGIISVREALAEGKLNGSNCNVAVLGIGEAFNTLDSKTVQQIIDSLEDRTDEPPVDVAPVEGEQEAVQDDTDQAVAPMET
B8LP35_________________MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAVGLRSKTHVVLVCVGKANSEFSSHQKKIFKVDDHIGVAIAGLTADGRVLSLHMRSECIHYKFLYDSPLPVGRLVVQLADKAQVCTQRSWTRPYGVGLLVAGLDETGPHLYQNCPSGNYFEYQAFAIGARSQAAKTYLERKFETFPECSRNELIRHGIISVKEALAEGKLNGSNCNVAVVGIGEAFNTLDSKTVQQIIDSLEDRADEPPVDVAPVEGEQGAVQDDTDQAAAPMET

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1196			25	75	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain