SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5121

Length: 891 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene5121 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22831	27/29

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histone H2A n=1 Tax=Populus trichocarpa RepID=B9I7E7_POPTR	-	-	2.0e-35	73%
FL-Next	sp=Histone H2A; Pinus taeda (Loblolly pine).	-	-	0.0	99%
Blast2go	histone h2a-like protein	-	-	0.0	92%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleolus	GO:0005730	Cellular Component	0.0	92%
Blast2go	cell wall	GO:0005618	Cellular Component	0.0	92%

Source	InterPros	Term	Type	Identity
Sma3	Histone-fold	IPR009072	-	-
Sma3	Histone core	IPR007125	-	-
Sma3	Histone H2A	IPR002119	-	-

Full-Lengther Next Prediction

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
173	25		75		0.996473
228		75		25	0.996473
231	25		75		0.996473
232		75		25	0.996473
236			75	25	0.996473
238	75			25	0.996473
239	75		25		0.996473
241		25		75	0.996473
243		25		75	0.996473
245	75			25	0.996473
300	80	20			0.995493
303			80	20	0.995493
419		88		11	0.923564
483		88		11	0.923564
656		11	88		0.923564
724	70	30			1.0
784	14	85			0.993533
798		85	14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain