SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5119

Length: 1174 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene5119 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18542	19/19

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	77%
Blast2go	unknown [Picea sitchensis]	-	-	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKB7

Fln msg:

Fln protein: MSQTFKKRACEPEVQTDAIDVREAKRFHGEETDEFLHLLELDKTLAEDEEAESAPSEELLEGVMRSLEEEIAATCSTSYPPSCSGDNSAASDTSSGPEGQTLDSDSLFDLCHLLEASDDELGIPPSPVRDLKHEVCPSRDETSEGLSENQGVISLGENWHFEDDFDDYQQFALYEEAWNASQLRDDYMNRDFGSPALLFDGEFSETCNLDTASCI*

Protein Length: 217

Fln nts: ATGGGGGAAGCCATTCCTGCAGTCAGCGATATGCCACGATATTATTAAGTTTTTCTAGTGAAGCCATCCCTGCAGCCGGTGATATGCCACGGTACCAATAAATTTTTCTCCCGTTGCAATGCCACACAGTTCCACTTTCTGCCAAAATCCCCATAAATTTTATATATAAGGCTTCCCGTGCTTTGCCTTATATCATAAAATGTTTAGATACTGTGTGTAGTTATATGAAGCCAACTCCACTACCCACTGCAATCATATGTGCTCTGTTACTTGTCTAGGAAAGAACTTTGTTACAGTCGAGGTTTGTTTTTTCAATTGAAGAAATTGAAATTGTCTCTCGATC_-_ATGTCCCAGACGTTCAAGAAACGCGCCTGTGAGCCCGAGGTTCAGACGGACGCCATTGACGTCCGGGAGGCGAAACGGTTCCACGGCGAAGAAACAGACGAGTTTCTTCACCTACTGGAATTAGACAAAACCCTAGCAGAAGACGAGGAAGCAGAAAGCGCTCCTAGTGAAGAGCTCTTAGAGGGAGTCATGAGAAGCCTTGAGGAAGAGATTGCGGCGACATGTTCCACTTCTTATCCCCCCTCCTGCTCCGGGGATAATTCGGCGGCCTCTGACACTTCTAGTGGGCCTGAAGGCCAAACCCTAGATTCGGACTCTCTGTTCGATCTATGTCATCTGTTAGAGGCTTCAGACGACGAGCTCGGCATTCCCCCAAGTCCCGTTCGCGACTTGAAGCACGAAGTCTGTCCATCTCGCGACGAAACATCGGAGGGCTTGTCGGAGAACCAGGGTGTCATATCTCTTGGTGAAAACTGGCACTTTGAGGACGATTTTGATGACTATCAACAGTTTGCATTGTACGAAGAAGCCTGGAATGCAAGCCAGCTGCGTGATGATTATATGAACAGAGATTTTGGAAGCCCAGCCTTGTTATTTGACGGAGAGTTTTCTGAGACTTGTAATTTGGATACTGCCAGTTGCATTTAA___TCAATTGCGGGGGCCTATTAAGAGTGTATACCTTGTGACTCTATATTTGACACCGAGATATGAAGAGACCTAGCTGTAGCATATATACGTAAAGAAGATGTACTTTTGACATGGAAATGTTTCATTATCTCGCACACCGTGTGTTATCATTTCAATGGAGAAAACAGTGTGCCATATCATTTC

Fln Alignment:

Contig5119___MSQTFKKRACEPEVQTDAIDVREAKRFHGEETDEFLHLLELDKTXXXXXXXXXXXXXXXXEGVMRSLEEEIAATCSTSYPPSCSGDNSAASDTSSGPEGQTLDSDSLFDLCHLLEASDDELGIPPSPVRDLKHEVCPSRDETSEGLSENQGVISLGENWHFEDDFDDYQQFALYEEAWNASQLRDDYMNRDFGSPALLFDGEFSETCNLDTASCI
A9NKB7_________________MSQTLRKRACEPEAQMDSMDVREPKRFHGEETDRFLHLLQLDKTLADDEEEECVPSEELVEGVMRSLEEEIGMTCSTSYPSSCSEVNSVASDISSGKEGQNLDSDSVFDLCHLLEASDDELGIPPSPVQDLKDELCLSPNETSEGLSESRDLKSLGDNWHFEDDFESYQQFALYEDAWDASQLRDDYMNRDFVSQGLLFDGDFSDAWRLDTASCI

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1026			50	50	1.0
1105		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain