SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5110

Length: 2030 nt

UniGene Fasta

>biog2_v2.0_unigene5110
ACAATGGAGTGCCAGAGATGGGCTAGCAAGGGAATAAACATCAAATATGAGATCAGAGACAACAGGAATGGTTACAAGGCGGGTGCTCTGAAAGAAGGAATGAAACGCAGCTATGTGAAGGAATGTGACTATGTAGCCATCTTCGATGCAGATTTCCAGCCAGAACCAGACTACCTATGGCGAACGATTCCATTCCTGGTGCGCAATCCTGAACTGGCTCTTGTTCAGGCCCGTTGGAAATTCGTGAATTCGGATGAATGCTTGATGACAAGAATGCAGGAGATGTCCTTGGATTATCATTTCACTGTCGAACAAGAAGTGGGCTCTTCTACTCACGCCTTCTTTGGGTTCAACGGTACTGCTGGAGTTTGGCGAATCAATGCTCTAAATGAAGCTGGTGGCTGGAAAGACCGCACAACTGTGGAAGATATGGATTTGGCTGTTCGGGCAAGTTTGAAGGGATGGAAGTTTGTTTTCGTGGGTGATCTTAAAGTCAAGAATGAATTACCTAGTACCTTCAAAGCATACCGCTATCAGCAGCACCGTTGGTCTTGTGGTCCAGCAAATTTGTTTAGAAAGATGGTCAAGGAGATCCTTAGAAACAAGAAAGTTACACCGTGGAAGAAGTTCCATGTCATTTATGCCTTCTTTTTTGTAAGGAAGATTGTGGCTCACATTGTCACATTCGCCTTTTACTGTGTTGTGATTCCTGCAACTGTACTTGTTCCGGAAGTCCAAGTACCCAAATGGGGGGCTGTTTACATTCCTTCAATCATCACTTTACTAAATGCAGTAAGCACTCCCAAATCTCTGCATTTGCTTGTTTTCTGGATTTTGTTTGAAAATGTGATGTCTCTGCACCGAACCAAGGCAACTTTCATTGGATTATTAGAAGCTGGCCGTGTCAATGAATGGGTTGTGACAGAAAAGCTTGGAGATGCCATGAAGCATAAATCTGGGAAGCAGATAAAAAAATCTCGCTCAAGAATTGGAGAAAGACTCCACGTCTTGGAACTTTTCGCTGGCGTCTATCTCTTCTTCTGTGCATCTTATGATCTCGCATTTGGAAAAAATCACTTCTATATCTATCTTTATCTGCAAGCTGCAGCGTTCTTCGTGATGGGATTTGGATACATTGGAACATTTGTACCAACATCCTAGGAGGCTAGGACTACATAAAACGGAGGTGCCAGCCTGTTCTGTCTCTGTGTGGCACAGGCCTGATTGGAGTTCAATTATCTATGTATAGATTGTATCTTCTCATTCTTTTTAGGAGGATAAGTACATGGTATAGTCCCCAAAGGGACAGTGCTTCTCATGCATATCTGTTAGCTTATGCGAGAAGTCAATTTTAGCGCTATGTATGTTACCAATAAAATCAGATTCAGGTTGTTTCTCTGATGAGGGTGTATTGGGTGTTTCAAATAGTCATTCAATGGTGATTAATCTCAGATGCTCCTGTACTTGAGGCAAGAGTCAAGATGGTTTAGTCTTTAGTATATTTAAGTTAAGATCTGCTTAACTTTGAAGACGGGATGAGATGCATTTTATGGAACTGCATTACAAGAAAAAAATATCTTGAAATTAGTTTGTTGTATTCTTTGTAACAGAGGGAAGGATATCATGCAGAGGACTCAGCTCAAAGGAGACACTTGTAATCAAACTGGCCTTTACATCCTTAGTTTCAGAGGTAATTGATTCCTGAGAGATTCTTTGTTAGGTCAGCGGCCATTCTTAAGATTTATAAACATGCTCGTGGCAATGTGTTACACATAAATTAAAGGTTGTTGAAGTTGTGAGGAAATTGTGATAGGCAACTGCTATGAAAGAGAGATAAGATAGCTACTCGGTGGGAAGTTGAGAGAGAAGATTGATGGATTTCTTCTTTCGTTGCCCCTCCGTACCCTTTGTCTATGATGATAAAATATAGAAATTTGGATCTGACTATCTGTTTCATGTAATGTGAGTGGGGAAACCCATATATATGGCCTGGCCTGCAATAAAATTCTTTGGATTATCACTTTGTAACC

Ace file of the UniGene biog2_v2.0_unigene5110

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2161	37/42
SustainPine v2.0	sp_v2.0_unigene21465	5/42

Source	Descriptions	Term	Type	Identity
AutoFact	Cellulose synthase-like A1 n=2 Tax=Pinaceae RepID=A3QT94_PINTA	-	-	98%
FL-Next	tr=Cellulose synthase-like A1; Pinus taeda (Loblolly pine).	-	-	98%
Blast2go	glucomannan 4-beta-mannosyltransferase 9-like	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	DNA mediated transformation	GO:0009294	Biological Process	89%
Blast2go	response to bacterium	GO:0009617	Biological Process	89%
Blast2go	mannan synthase activity	GO:0051753	Molecular Function	89%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl transferase, family 2	IPR001173	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A3QT94

Fln msg: your sequence is shorter than subject: 387 - 530

Fln protein: TMECQRWASKGINIKYEIRDNRNGYKAGALKEGMKRSYVKECDYVAIFDADFQPEPDYLWRTIPFLVRNPELALVQARWKFVNSDECLMTRMQEMSLDYHFTVEQEVGSSTHAFFGFNGTAGVWRINALNEAGGWKDRTTVEDMDLAVRASLKGWKFVFVGDLKVKNELPSTFKAYRYQQHRWSCGPANLFRKMVKEILRNKKVTPWKKFHVIYAFFFVRKIVAHIVTFAFYCVVIPATVLVPEVQVPKWGAVYIPSIITLLNAVSTPKSLHLLVFWILFENVMSLHRTKATFIGLLEAGRVNEWVVTEKLGDAMKHKSGKQIKKSRSRIGERLHVLELFAGVYLFFCASYDLAFGKNHFYIYLYLQAAAFFVMGFGYIGTFVPTS*

Protein Length: 388

Fln nts: ACAATGGAGTGCCAGAGATGGGCTAGCAAGGGAATAAACATCAAATATGAGATCAGAGACAACAGGAATGGTTACAAGGCGGGTGCTCTGAAAGAAGGAATGAAACGCAGCTATGTGAAGGAATGTGACTATGTAGCCATCTTCGATGCAGATTTCCAGCCAGAACCAGACTACCTATGGCGAACGATTCCATTCCTGGTGCGCAATCCTGAACTGGCTCTTGTTCAGGCCCGTTGGAAATTCGTGAATTCGGATGAATGCTTGATGACAAGAATGCAGGAGATGTCCTTGGATTATCATTTCACTGTCGAACAAGAAGTGGGCTCTTCTACTCACGCCTTCTTTGGGTTCAACGGTACTGCTGGAGTTTGGCGAATCAATGCTCTAAATGAAGCTGGTGGCTGGAAAGACCGCACAACTGTGGAAGATATGGATTTGGCTGTTCGGGCAAGTTTGAAGGGATGGAAGTTTGTTTTCGTGGGTGATCTTAAAGTCAAGAATGAATTACCTAGTACCTTCAAAGCATACCGCTATCAGCAGCACCGTTGGTCTTGTGGTCCAGCAAATTTGTTTAGAAAGATGGTCAAGGAGATCCTTAGAAACAAGAAAGTTACACCGTGGAAGAAGTTCCATGTCATTTATGCCTTCTTTTTTGTAAGGAAGATTGTGGCTCACATTGTCACATTCGCCTTTTACTGTGTTGTGATTCCTGCAACTGTACTTGTTCCGGAAGTCCAAGTACCCAAATGGGGGGCTGTTTACATTCCTTCAATCATCACTTTACTAAATGCAGTAAGCACTCCCAAATCTCTGCATTTGCTTGTTTTCTGGATTTTGTTTGAAAATGTGATGTCTCTGCACCGAACCAAGGCAACTTTCATTGGATTATTAGAAGCTGGCCGTGTCAATGAATGGGTTGTGACAGAAAAGCTTGGAGATGCCATGAAGCATAAATCTGGGAAGCAGATAAAAAAATCTCGCTCAAGAATTGGAGAAAGACTCCACGTCTTGGAACTTTTCGCTGGCGTCTATCTCTTCTTCTGTGCATCTTATGATCTCGCATTTGGAAAAAATCACTTCTATATCTATCTTTATCTGCAAGCTGCAGCGTTCTTCGTGATGGGATTTGGATACATTGGAACATTTGTACCAACATCCTAG___GAGGCTAGGACTACATAAAACGGAGGTGCCAGCCTGTTCTGTCTCTGTGTGGCACAGGCCTGATTGGAGTTCAATTATCTATGTATAGATTGTATCTTCTCATTCTTTTTAGGAGGATAAGTACATGGTATAGTCCCCAAAGGGACAGTGCTTCTCATGCATATCTGTTAGCTTATGCGAGAAGTCAATTTTAGCGCTATGTATGTTACCAATAAAATCAGATTCAGGTTGTTTCTCTGATGAGGGTGTATTGGGTGTTTCAAATAGTCATTCAATGGTGATTAATCTCAGATGCTCCTGTACTTGAGGCAAGAGTCAAGATGGTTTAGTCTTTAGTATATTTAAGTTAAGATCTGCTTAACTTTGAAGACGGGATGAGATGCATTTTATGGAACTGCATTACAAGAAAAAAATATCTTGAAATTAGTTTGTTGTATTCTTTGTAACAGAGGGAAGGATATCATGCAGAGGACTCAGCTCAAAGGAGACACTTGTAATCAAACTGGCCTTTACATCCTTAGTTTCAGAGGTAATTGATTCCTGAGAGATTCTTTGTTAGGTCAGCGGCCATTCTTAAGATTTATAAACATGCTCGTGGCAATGTGTTACACATAAATTAAAGGTTGTTGAAGTTGTGAGGAAATTGTGATAGGCAACTGCTATGAAAGAGAGATAAGATAGCTACTCGGTGGGAAGTTGAGAGAGAAGATTGATGGATTTCTTCTTTCGTTGCCCCTCCGTACCCTTTGTCTATGATGATAAAATATAGAAATTTGGATCTGACTATCTGTTTCATGTAATGTGAGTGGGGAAACCCATATATATGGCCTGGCCTGCAATAAAATTCTTTGGATTATCACTTTGTAACC

Fln Alignment:

Contig5110___TMECQRWASKGINIKYEIRDNRNGYKAGALKEGMKRSYVKECDYVAIFDADFQPEPDYLWRTIPFLVRNPELALVQARWKFVNSDECLMTRMQEMSLDYHFTVEQEVGSSTHAFFGFNGTAGVWRINALNEAGGWKDRTTVEDMDLAVRASLKGWKFVFVGDLKVKNELPSTFKAYRYQQHRWSCGPANLFRKMVKEILRNKKVTPWKKFHVIYAFFFVRKIVAHIVTFAFYCVVIPATVLVPEVQVPKWGAVYIPSIITLLNAVSTPKSLHLLVFWILFENVMSLHRTKATFIGLLEAGRVNEWVVTEKLGDAMKHKSGKQIKKSRSRIGERLHVLELFAGVYLFFCASYDLAFGKNHFYIYLYLQAAAFFVMGFGYIGTFVPTS
A3QT94_________________TMECQRWASKGINIKYEIRDNRNGYKAGALKEGMKRSYVKDCDYVAIFDADFQPEPDYLWRTVPFLVHNPELALVQARWKFVNSDECLMTRMQEMSLDYHFTVEQEVGSSTHAFFGFNGTAGVWRINALNEAGGWKDRTTVEDMDLAVRASLKGWKFVFVGDLKVKNELPSTFKAYRYQQHRWSCGPANLFRKMVMEILRNKRVTPWKKFHVIYAFFFVRKIVAHIVTFTFYCVVIPATVLVPEVQVPKWGAVYIPSIITLLNAVSTPKSLHLLVFWILFENVMSLHRTKATFIGLLEAGRVNEWVVTEKLGDAMKHKSGKQIKKSRSRIGERLHVLELFAGVYLFFCASYDLAFGRNHFYIYLYLQAAAFFVMGFGYIGTFVPTS

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
618		75		25	0.996473
643		50		50	1.0
836		50		50	1.0
1159	63			36	1.0
1423			12	75	0.975346
1524			10	90	0.90298
1558	90		10		0.90298
1569	60	40			1.0
1641	90	10			0.90298
1653	50		50		1.0
1658		10		90	0.90298
1730		54	9		1.0
1824		37	62		1.0
1825		62		37	1.0
1876			12	87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain