SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5109

Length: 1034 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene5109

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16524	20/21

Source	Descriptions	Term	Type	Identity
AutoFact	cell cycle arrest protein BUB3 [Arabidopsis thaliana] dbj\|BAB02543.1\| mitotic checkpoint protein [Arabidopsis thaliana] gb\|AAM64953.1\| mitotic checkpoint protein, putative [Arabidopsis thaliana] gb\|AAO42274.1\| putative mitotic checkpoint protein [Arabidop	-	-	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	mitotic checkpoint protein	-	-	93%

Source	GOs	Term	Type	Identity
Blast2go	mitotic cell cycle spindle assembly checkpoint	GO:0007094	Biological Process	93%
Blast2go	kinetochore	GO:0000776	Cellular Component	93%
Blast2go	phragmoplast	GO:0009524	Cellular Component	93%

Source	InterPros	Term	Type	Identity
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3		IPR019782	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NM95

Fln msg: Distance to subject end: 29 aas, your sequence is shorter than subject: 313 - 342

Fln protein: MAATSPVGAGSGRELANPPTDGISNLRFSNHSDHLLVSSWDRKVRLYDASANSLKGQFVHGGPVLDCCFHDDASGFSGSADNTVRRYDFSTRKEDILGRHEAPVRCVEYSYAAGQVITGSWDKTLKCWDPRGASGQEKTLVGTYSQPERVYSMSLVGHRLVVATAGRHINVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGFALSSVEGRVAMEFFDLSEAGQAKKYAFKCHRKSEAGRDTVYPVNAIAFHPIYGTFATGGCDGYVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGE

Protein Length: 314

Fln nts: AAATATTTAAAACAGTTCGGCTTATATTGGCCAGCGATCAAAGTCTGCTAGAAGAAGCGTCGATTTAACCTCAGGAGGAAAGGGGGAGGAAATC_-_ATGGCGGCAACGTCTCCCGTTGGTGCCGGCTCGGGACGGGAGCTCGCGAATCCTCCCACTGACGGCATTTCTAACTTGAGATTTTCCAATCACAGCGACCATTTGCTCGTCTCCTCATGGGACAGAAAGGTGCGATTATATGATGCAAGCGCGAATTCGTTAAAGGGTCAATTCGTACACGGAGGTCCGGTTTTAGATTGCTGTTTTCACGACGACGCATCGGGTTTCAGTGGAAGTGCTGACAACACTGTGAGAAGGTATGATTTCAGCACCAGGAAGGAGGATATATTGGGCAGGCATGAAGCTCCTGTTCGTTGTGTTGAGTATTCATATGCAGCAGGGCAAGTGATAACGGGGAGTTGGGACAAGACATTGAAATGTTGGGACCCTAGAGGTGCAAGTGGGCAGGAGAAGACTCTTGTTGGTACATATTCACAACCGGAGCGCGTGTATTCTATGTCACTAGTTGGTCACCGGTTGGTGGTAGCCACAGCTGGCAGGCATATAAATGTTTATGATCTCCGTAACATGTCACAACCTGAACAACGAAGGGAATCGTCCTTGAAGTATCAAACTAGATGTGTGCGTTGCTATCCAAATGGAACAGGTTTTGCCCTTAGTTCTGTGGAAGGTCGCGTGGCTATGGAGTTTTTTGATTTATCTGAAGCTGGTCAAGCTAAAAAATATGCCTTTAAATGTCATCGCAAGTCAGAGGCTGGCAGAGATACTGTTTATCCAGTAAACGCAATTGCCTTTCATCCCATTTATGGTACTTTCGCCACTGGGGGCTGTGATGGCTATGTTAATGTATGGGATGGCAACAACAAAAAGAGGTTGTACCAGTATTCAAAATATCCTACAAGCATTGCTGCTTTATCATTTAGTAGAGATGGTCGTTTGTTGGCTGTGGCATCAAGCTACACATTTGAGGAGGGTGAAA

Fln Alignment:

Contig5109___MAATSPVGAGSGRELANPPTDGISNLRFSNHSDHLLVSSWDRKVRLYDASANSLKGQFVHGGPVLDCCFHDDASGFSGSADNTVRRYDFSTRKEDILGRHEAPVRCVEYSYAAGQVITGSWDKTLKCWDPRGASGQEKTLVGTYSQPERVYSMSLVGHRLVVATAGRHINVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGFALSSVEGRVAMEFFDLSEAGQAKKYAFKCHRKSEAGRDTVYPVNAIAFHPIYGTFATGGCDGYVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGE
A9NM95_________________MAATAPVGAGSGRELANPPTDGISNLRFSNHSDHLLVSSWDRKVRLYDASANTLKGQFVHGGPVLDCCFHDDASGFSGSADHAVRRYDFSTRKEDILGRHEAPVRCVEYSYAAGQVITGSWDKTLKCWDPRGASGHEKTLVGTYSQPERVYSMSLVGHRLVVATAGRNINVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGFALSSVEGRVAMEFFDLSEAGQAKKYAFKCHRKSEAGRDTVYPVNAIAFHPIYGTFATGGCDGYVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGD

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
88	33		66		0.997452
89	66		33		0.997452
468	83		16		0.994512
572		66	33		0.997452
574		33	66		0.997452
575	33		66		0.997452
576		33		66	0.997452
577	33			66	0.997452
579		33	66		0.997452
583		33		66	0.997452
798		16		83	0.994512
864		25		75	1.0
936	33		66		0.997452
990		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain