SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5100

Length: 1114 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene5100

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8171	5/24
SustainPine v2.0	sp_v2.0_unigene31088	17/24
SustainPine v2.0	sp_v2.0_unigene62483	2/24

Source	Descriptions	Term	Type	e value	Identity
AutoFact	delta(3), delta(2)-enoyl CoA isomerase 1 [Arabidopsis thaliana] gb\|AAB60906.1\| F5I14.5 gene product [Arabidopsis thaliana] gb\|AAR20752.1\| At1g65520 [Arabidopsis thaliana] gb\|AAS92341.1\| At1g65520 [Arabidopsis thaliana] gb\|AEE34392.1\| delta(3), delta(2)-en	-	-	7.0e-35	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	carnitinyl- dehydratase-like	-	-	0.0	65%

Source	InterPros	Term	Type	e value	Identity
Sma3	Crotonase, core	IPR001753	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NYU1

Fln msg: Separated hits, possible frame ERROR between 499 and 517,

Fln protein: MCSLEKRGRVYILTLLGEGDHRFNPSTIDAISAALQEVNDSPDAGALVTTNEGRFFSNGLDLQWISQNPEDHLSTIRIKFENLLAAFMRVKVPxxxxxxxARCGGGFILALAHDYRFMRGDRSVLYMNELDIGMKLPRSLMAVIRSKLSPGTLRDVALGARKFSAHDGSGRWDHGFCFRGFSSDIGGRCWRSSEIGGQGLEEGDLQSTQVGSFPGRC*RA*

Protein Length: 222

Fln nts: GGAGATTAGGTAACAGAATGATGGCAATTCCTATTTCCACTTCTATAGCAAAGTTAATGCTGTTTGACATGCAAGAACAATTGCAAGTTACCTTGCATTAACATGCTAAAGTTGGGGAAATATAAATGCAAAAACAACTCTTATTCCCCTTGGATATCAGATAGCGTTAACTTTGCTTCACTGCACGTAGATTGGGGATTGTCCAATTGGAGCGATT_-_ATGTGCAGCCTGGAGAAGAGAGGAAGGGTGTACATCCTCACTCTGTTGGGAGAGGGAGATCACAGGTTCAATCCCTCCACCATCGATGCCATTTCTGCCGCACTGCAAGAGGTCAATGATTCCCCAGACGCGGGGGCCCTCGTGACCACAAACGAGGGCAGATTCTTTTCAAACGGCCTCGACCTTCAATGGATATCTCAGAATCCAGAAGACCACTTGAGCACAATCAGAATCAAGTTCGAAAACCTGCTGGCCGCCTTCATGAGGGTTAAGGTCCCCACxxxxxxxxxxxxxxxxxxGGCACGCTGCGGCGGGGGGTTTATTCTGGCCCTGGCGCACGACTACAGGTTCATGAGAGGAGACCGATCTGTGCTCTACATGAATGAGCTCGACATCGGGATGAAGCTTCCCAGGAGTCTCATGGCCGTCATACGGAGCAAGCTCTCGCCCGGAACCCTAAGGGATGTGGCATTGGGCGCCCGAAAGTTTAGTGCTCATGATGGCTCTGGAAGGTGGGATCACGGATTCTGTTTTCGCGGATTCTCCTCAGACATTGGAGGCCGCTGTTGGCGAAGCTCAGAAATTGGCGGGCAGGGGTTGGAAGAAGGAGATTTACAGTCAACTCAGGTTGGGAGTTTTCCCGGGCGTTGTTGAAGAGCTTGA___TGCCCATCGGGAACCCTATCTTTTTCCTGCCTCTGCCAAGCTGTGATTATGGGGGTTTTGGTTTCTGTCTGTGCTTGTAGGGTTAGAGATTCAAATCCCTCTGCAACCATGGGGTTTTAATTCGATTTGTGTGTCTATGAACGGTTTCTCTAAATAATTTGGGGTCTCTCAGCCTCCGGCAATCATTGCTGACAGGAAATGCAGAGATGCACAAATGTCTGCAATAATCTCTAAA

Fln Alignment:

Contig5100___MCSLEKRGRVYILTLLGEGDHRFNPSTIDAISAALQEVNDSPDAGALVTTNEGRFFSNGLDLQWISQNPEDHLSTIRIKFENLLAAFMRVKVPTxxxxxxARCG----GGFILALAHDYRFMRGDRSVLYMNELDIGMKLPRSLMAVIRSKLSPGTLRDVALGARKFSAHDGSGRWDHGFCFRGFSSDIGGRCWRSSEIGGQGLEEGDLQSTQVGSFPG
A9NYU1_________________MCNLEKRGRVYILTLLGDGDHRFNPSTIDAISAALKEVQDSPDAGALVTTNQGRYFSNGLDLQWISQNPDAHLSTIRIKFENLLASFIRLRVPTxxxxxxAICGHAAAGGFIVALAHDYRFMRGDRSVLYMSELDIGMKLPRSLMAVIRSKLLPGTLRDVVLGARKFSAQMALEGGIVDSVYADSPQTLEAAVSEAQKLAGRGWKKEIYSELRLGAFPG

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
372		20	80		0.995493
382	20			80	0.995493
407	80		20		0.995493
416	20			80	0.995493
439			75	25	0.996473
449	75		25		0.996473
494		66	33		0.997452
1014		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain