SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5088

Length: 640 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene5088 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4965	9/9

Source	Descriptions	Term	Type	Identity
AutoFact	ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic n=3 Tax=core eudicotyledons RepID=CLPAB_SOLLC	-	-	80%
FL-Next	sp=Chaperone protein ClpC1, chloroplastic; Oryza sativa subsp. japonica (Rice).	-	-	49%
Blast2go	chaperone protein chloroplastic-like	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	nucleotide-excision repair	GO:0006289	Biological Process	92%
Blast2go	chloroplast organization	GO:0009658	Biological Process	92%
Blast2go	protein import into chloroplast stroma	GO:0045037	Biological Process	92%
Blast2go	regulation of chlorophyll biosynthetic process	GO:0010380	Biological Process	92%
Blast2go	protein metabolic process	GO:0019538	Biological Process	92%
Blast2go	ATP-dependent peptidase activity	GO:0004176	Molecular Function	92%
Blast2go	DNA binding	GO:0003677	Molecular Function	92%
Blast2go	nuclease activity	GO:0004518	Molecular Function	92%
Blast2go	ATP binding	GO:0005524	Molecular Function	92%
Blast2go	Tic complex	GO:0031897	Cellular Component	92%
Blast2go	cell wall	GO:0005618	Cellular Component	92%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	92%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	92%
Blast2go	mitochondrion	GO:0005739	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-2	IPR013093	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	Chaperonin ClpA/B, conserved site	IPR018368	-	-
Sma3	Chaperonin ClpA/B	IPR001270	-	-
Sma3	Clp, N-terminal	IPR004176	-	-
Sma3	UVR domain	IPR001943	-	-

Full-Lengther Next Prediction

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
246	14		85		0.993533
247	85		14		0.993533
272		14		85	0.993533
473		80		20	0.995493
629		33	66		0.997452
630	66	33			0.997452
631	66	33			0.997452
632		33	66		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain