SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5079

Length: 1109 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene5079

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21444	3/17
SustainPine v2.0	sp_v2.0_unigene60359	14/17

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Mitochondrial glycoprotein family protein [Arabidopsis thaliana] emb\|CAB82978.1\| putative protein [Arabidopsis thaliana] gb\|AAP88362.1\| At5g02050 [Arabidopsis thaliana] dbj\|BAE99935.1\| hypothetical protein [Arabidopsis thaliana] gb\|AED90426.1\| Mitochondri	-	-	9.0e-33	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	uncharacterized protein mitochondrial-like	-	-	0.0	62%

Source	InterPros	Term	Type	e value	Identity
Sma3	Mitochondrial glycoprotein	IPR003428	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZV3

Fln msg:

Fln protein: MALFYVVRRAASSVAPVAFRALNQQRLIHSAVGAAFQNRCRREITKGTVWVPSRAATSIAAKSKYEENLLAVLDEEIQCAVESDPPTQDVKPEGNIPFEIEDLPGVQTITLRRKYGNEEIKVEVLSGDVGDDSDEEGSGNDSTSGGIQVNLTVTIAKGGGPSLEFICTGYSDEVSIEGMAVKHKQPTEAEAVDPIPYEGPPFNDLDENLQKGFHKYLEVRGITPSLSNYLCEYMINKESKEYTNWLKNVKEFVAK*

Protein Length: 257

Fln nts: ACAGCGATAGGGTTTTATGAAAACGATTAAGCTCTTTTGATCCAAAGTCTTAAACCCTACCTCTAGACAGGGTTTTAGTTCGGATAGATAACCCTATCTGCGATTTCGATTTAACGTAGAGAAATCTTTGTCGGA_-_ATGGCTCTGTTCTATGTTGTTCGCAGGGCTGCCTCTTCTGTAGCACCAGTGGCCTTCAGAGCCCTAAATCAGCAGAGATTAATTCATTCAGCCGTTGGGGCTGCATTTCAAAACCGCTGCAGGAGAGAAATAACGAAAGGAACAGTATGGGTTCCAAGCCGAGCGGCTACTTCAATAGCAGCCAAGTCGAAATACGAAGAAAACCTCCTGGCAGTGCTCGACGAGGAAATTCAGTGTGCAGTTGAATCAGACCCTCCCACGCAGGATGTCAAACCCGAGGGCAACATACCCTTCGAGATAGAAGATTTGCCAGGCGTTCAGACGATCACACTCCGGAGGAAATACGGCAACGAGGAGATAAAGGTTGAAGTTCTCTCCGGGGATGTTGGTGACGATAGCGATGAAGAAGGCAGTGGCAACGATTCCACGTCAGGGGGAATCCAAGTGAATTTAACGGTCACTATTGCCAAAGGAGGAGGTCCTTCCCTTGAGTTTATTTGCACTGGGTATTCCGACGAGGTTTCAATTGAGGGCATGGCTGTCAAGCATAAGCAGCCAACAGAAGCAGAAGCAGTTGACCCAATTCCGTATGAGGGACCTCCCTTCAACGACTTGGATGAGAATTTGCAAAAGGGCTTTCATAAATACCTGGAAGTGCGAGGCATCACACCTAGTCTATCAAATTACTTGTGCGAGTACATGATAAATAAGGAGAGCAAGGAGTATACCAATTGGTTGAAGAATGTTAAGGAATTTGTTGCGAAGTAG___AATTTAATGACATTTTTGTTTTGGTAGCTAGTTATCCATTCACCAAGGAAAGGGCCTGATCAACATTTTAGTGAAGAGAAGAAGAAATTGGTTTCATGGGTGTTGTAAACTCCCCTGCCAATTTTTTGAGAAAACTTTGTTGTATTTCAAGTTTTTGATATCCTGTGTTATATGCACTATCCTGTTATATGCCAGGAGTATGTTAC

Fln Alignment:

Contig5079___MALFYXXXXXXXXXXXXXXXXLNQQRLIHSAVGAAFQNRCRREITKGTVWVPSRAATSIAAKSKYEENLLAVLDEEIQCAVESDPPTQDVKPEGNIPFEIEDLPGVQTITLRRKYGNEEIKXXXXXXXXXXXXXXXXXXXXXXXXXIQVNLTVTIAKGGGPSLEFICTGYSDEVSIEGMAVKHKQPTEAEAVDPIPYEGPPFNDLDENLQKGFHKYLEVRGITPSLSNYLCEYMINKESKEYTNWLKNVKEFVAK
A9NZV3_________________MALFYVVRRAASSVAPVAFRAIKQQRFIHSAVGSAFQNRYRREITKGTSWVPSRAATSIVAKSKFEENLLAVLDEEIQCAVESDPPTQDVKPEGTIPFEIEDLPGVQTIALRRKYGSEEIKVEVLSGDDGDGNDEEGSGNDTASGGIQVNLTVSVAKGGGPFLEFICTGYADAVSIEGMAVKQKQPTESDAVDPIPYEGPPFNDLDENLQKGFHKYLEVRGITPSLSNYLCEYMINKESKEYTNWLKNVKEFVEK

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
899	16	83			0.994512
906	16		83		0.994512
910	20			80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain