SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5038

Length: 1213 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene5038 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25452	19/19

Source	Descriptions	Term	Type	Identity
AutoFact	mortality factor 4-like protein 1 [Arabidopsis thaliana] gb\|AAK59778.1\| AT4g37280/C7A10_80 [Arabidopsis thaliana] gb\|AAM98302.1\| At4g37280/C7A10_80 [Arabidopsis thaliana] gb\|AEE86776.1\| mortality factor 4-like protein 1 [Arabidopsis thaliana]	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	mortality factor 4-like protein 1	-	-	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	Chromo domain/shadow	IPR000953	-	0.0	-
Sma3	MRG	IPR008676	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9P075

Fln msg: atg_distance in limit (1-15): atg_distance = 6, W2: There is no M at the beginning, your sequence is longer than subject: 332 - 280

Fln protein: NRRQEDQQPPEAPGADDHNNNSKVKENMDDEEAIKQQSSHFKEGEKVLSYHGPLIYEAKVQRAEFRKKEWKYYVHYLGWSKNWDEWVGADRLMQFTDENVQKQQELLKNQGGDKNFKARISQSKPRSSTDVKVEKEDVKNYVARGKKRKGDYGVEEKDGESPEKVVKIQLPTTLKKQLVDDCEFVTQLGKLVKLPRNPTVDDILKKYLEHKAKKEGAVGDPVVEILNGLRSYFDKALPAMLLYKQERQQYSEAVPERNNVAPSTVYGAEHFLRLFVKLPELLVYVNMEEEALTQLQEKLLDFLKFLQKNQSNFFLSNYDGPKVPPEVETRD*

Protein Length: 333

Fln nts: CAACCGGCGCCAAGAGGACCAGCAACCTCCCGAAGCACCTGGAGCAGACGACCACAACAACAATAGTAAAGTTAAAGAGAACATGGACGACGAGGAGGCCATAAAGCAGCAGAGTTCACATTTCAAAGAGGGTGAAAAGGTTCTTTCCTACCACGGACCCCTCATCTACGAGGCCAAGGTCCAGAGAGCAGAGTTTCGGAAGAAAGAATGGAAATATTATGTCCACTATTTGGGTTGGAGCAAAAATTGGGACGAATGGGTTGGCGCAGACCGCCTTATGCAGTTCACTGATGAAAATGTTCAAAAGCAGCAGGAGCTGCTAAAAAACCAGGGTGGTGACAAGAATTTTAAGGCTCGCATAAGTCAGAGCAAGCCTAGAAGTTCTACTGATGTGAAAGTGGAAAAAGAGGATGTTAAGAATTATGTGGCTAGGGGCAAGAAGCGGAAAGGTGATTATGGAGTTGAGGAGAAGGATGGAGAATCTCCTGAAAAAGTTGTGAAGATTCAGTTGCCAACAACTTTGAAAAAGCAGCTTGTTGATGATTGTGAATTTGTAACACAGCTGGGCAAGTTGGTTAAGCTCCCACGTAATCCGACTGTGGATGACATTTTAAAAAAGTATCTTGAGCACAAGGCTAAGAAGGAAGGCGCGGTAGGTGACCCTGTTGTGGAAATATTAAATGGTCTCCGCAGCTACTTCGACAAGGCTTTGCCTGCGATGCTCTTGTATAAGCAGGAACGACAACAATATAGTGAGGCTGTTCCTGAGAGAAACAATGTAGCTCCATCAACAGTGTATGGGGCTGAGCACTTCCTTCGTCTTTTTGTGAAATTGCCTGAGCTACTAGTCTATGTGAACATGGAAGAGGAAGCCCTGACACAGTTGCAAGAAAAATTACTTGATTTTCTCAAGTTTTTACAGAAAAATCAAAGCAACTTTTTCCTTTCTAACTACGATGGGCCAAAAGTCCCCCCGGAAGTGGAGACAAGAGACTAG___ATAGGGTCTTGACTTGTTTTCATATGTGATTGACTTTTCAAAAGGTTTGATTTTTGGTGAACTGGTCAACAATGCTATATGTAGAATTTGTAAATCAAGGTTGGCTTTTGTTGAGTGGTAAAACAATGTGATCATATATGTAGAATTTGTATATCAAGGTTGGCCATTGTTGAGTGGTAAAGCAATGTGATCACATCGTATCACGTTTTTGAGCAA

Fln Alignment:

Contig5038___QEDQQPPEAPGADDHNNNSKVKENMDDEEAIKQQSSHFKEGEKVLSYHGPLIYEAKVQRAEFRKKEWKYYVHYLGWSKNWDEWVGADRLMQFTDENVQKQQELLKNQGGDKNFKARISQSKPRSSTDVKVEKEDVKNYVARGKKRKGDYGVEEKDGESPEKVVKIQLPTTLKKQLVDDCEFVTQLGKLVKLPRNPTVDDILKKYLEHKAKKEGAVGDPVVEILNGLRSYFDKALPAMLLYKQERQQYSEAVPERNNVAPSTVYGAEHFLRL
A9P075_________________KEDLQPPEAPAADDHNNDTKVKDNMDEDEAIKQQSSHFKEGEKVLAYHGPLIYEAKVQRAELRKKEWKYYVHYLGWSKNWDEWVGADRLMHFTEENVRKQQGLLKNQSGDKSFKGRISQSKPRSSTDVKVEKEDVKNYVARGKKRKGEYGVEEKDGESPEKVVKIQLPTTLKKQLVDDCEFVTQLGKLVKLPRNPTVDDILKKYLEHKTKKEGAVGDSVVEILNGLRSYFDKALPAMLLYKQERQQYSEAVPERNNVAPSTVYGAEHFLRL

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
387	20	80			0.995493
388	80	20			0.995493
651	25		75		0.996473
744		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain