SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5013

Length: 1210 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene5013

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5318	19/19

Source	Descriptions	Term	Type	Identity
AutoFact	PHD finger and bromo-adjacent homology domain-containing protein [Arabidopsis thaliana] dbj\|BAD95354.1\| receptor like protein [Arabidopsis thaliana] gb\|AEE84563.1\| PHD finger and bromo-adjacent homology domain-containing protein [Arabidopsis thaliana]	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	ebs-bah-phd domain-containing protein	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	positive regulation of flower development	GO:0009911	Biological Process	92%
Blast2go	seed germination	GO:0009845	Biological Process	92%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	92%
Blast2go	DNA binding	GO:0003677	Molecular Function	92%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	92%

Source	InterPros	Term	Type	Identity
Sma3	Bromo adjacent homology (BAH) domain	IPR001025	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8U6

Fln msg: your sequence is longer than subject: 209 - 162

Fln protein: MAKTRPGKKDLESYTIKGTNKIVKVGDCVFMRNSDADRPPYVARVEKIEADNRNNVKVHVRWYYRPEESIGGRRQFHGAKELFLSDHYDIQSAHTIEGKCTVHTFKSYTKLDNVGTEDYFCRFEYKAVSGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCVDMTIEQAKKVERFFVQIVHLRMMIKSHATSIQFHYLLRTR*

Protein Length: 210

Fln nts: GCTTCCGCATCACTGTTGGTACAGAACAGTATCTTATACTGAGGGTTTTGCAGACCACCAGTCCGGGATTTGCATGGTTCTTAATAAATTTAAATACCAGTTGCAGCGAAAATGCTTCGACTCCCAAAACTAGTCGGCAAGTGTATTATCCCGAGAAATCACGTTCCGTCGTTGGGGTTTCTCTTGCTTTTATCGAGGTGCATTTGAACGGAGTGGGGACTAGTACTGCTCGTCTTAACAGTGGTTAGCGAAGTCTAGTTATTGTTTTTGGAGGGAAGGACGCCATAATCTGTGCGCACGGGGAAACTGTGTAGTCTACCTCTGTTGTTAACGGAGGAGC_-_ATGGCGAAAACGAGACCAGGGAAGAAGGATTTGGAATCTTACACAATCAAAGGGACTAACAAGATCGTGAAAGTAGGAGATTGTGTGTTCATGCGAAACTCTGATGCCGATAGGCCTCCTTATGTTGCGAGAGTGGAAAAAATAGAGGCTGATAATCGAAACAATGTCAAAGTCCATGTTCGTTGGTATTATCGCCCAGAGGAATCAATTGGTGGAAGGAGACAATTTCATGGAGCAAAGGAGTTGTTCCTGTCTGACCACTATGATATTCAAAGTGCCCATACTATAGAAGGCAAATGTACAGTTCACACATTTAAAAGTTATACTAAGCTTGACAATGTTGGTACCGAGGATTACTTCTGTCGCTTTGAATATAAGGCAGTTTCAGGTGGTTTCACTCCTGACAGGGTGGCAGTGTATTGCAAATGTGAGATGCCATATAATCCAGATGATCTTATGGTGCAATGCGAAGGGTGCAAAGATTGGTTTCACCCTTCTTGTGTGGACATGACCATAGAACAAGCAAAAAAAGTAGAACGTTTTTTTGTTCAGATTGTTCATCTGAGGATGATGATAAAAAGTCACGCAACTTCCATCCAGTTTCACTACCTGTTGAGAACAAGGTAG___AATCGAAGCGCCGAAAGAAGTGATCCTCTGTGAAATTAGAAACAATTATTTGGATCATAGATGTGGTTGGAAATTTTTCTTGCAGCGTACTTATGTAAGTGTTTTGGACATAGATACAAACAGTCAAACTACTTATTCAATAGACAATTTGGTCTTCAACTTTGGCTCTATTGTATAGTTTATGTTTGTACCGTCATGGTGCATTATAAATAGTAAAAAAATACTTATGTAATTGACAAGGCA

Fln Alignment:

Contig5013___MAKTRPGKKDLESYTIKGTNKIVKVGDCVFMRNSDADRPPYVARVEKIEADNRNNVKVHVRWYYRPEESIGGRRQFHGAKELFLSDHYDIQSAHTIEGKCTVHTFKSYTKLDNVGTEDYFCRFEYKAVSGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDW
D5A8U6_________________MAKTRPGKKDLESYTIKGTNKIVKVGDCVFMRNSDADRPPYVARVEKIEADNRNNVKVHVRWYYRPEESIGGRRQSHGAKELFLSDHYDIQSAHTIEGKCTVHTFKNYTKLDNVGSEDYFCRFEYKAVSGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDW

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
501	33	66			0.997452
628	80		20		0.995493
829			16	83	0.994512
927	25			75	0.996473
928		75		25	0.996473
929	75		25		0.996473
930		75	25		0.996473
956	14			85	0.993533
957		14	85		0.993533
958	14			85	0.993533
961	85		14		0.993533
965		85	14		0.993533
967	85			14	0.993533
977	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain