SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5002

Length: 1028 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene5002 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22594	17/17

Source	Descriptions	Term	Type	Identity
AutoFact	Protein disulfide isomerase L-2 n=1 Tax=Glycine max RepID=B1Q2X5_SOYBN	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	protein disulfide isomerase l-2	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	response to oxidative stress	GO:0006979	Biological Process	79%
Blast2go	catalytic activity	GO:0003824	Molecular Function	79%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	79%
Blast2go	chloroplast	GO:0009507	Cellular Component	79%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	79%
Blast2go	mitochondrion	GO:0005739	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	Disulphide isomerase	IPR005788	-	-
Sma3	Protein disulphide isomerase	IPR005792	-	-
Sma3		IPR017936	-	-
Sma3		IPR006662	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3	Thioredoxin domain	IPR013766	-	-
Sma3		IPR012335	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWK0

Fln msg: your sequence is shorter than subject: 237 - 566

Fln protein: IPSFQEAAKAFKGKILFVHVDSDNADVGKPIMEYFGLSGDEPKVIACVLSGEPIKYLFEAEINADNIKAFGEDFLADKLKPFFKSDPVPEKNDGDVKIVVGKNFDEIVLDESKDVLLEIYAPWCGHCQALEPIYNKLAKQLRGVDSLVLAKMDGTTNEHARAKSDGYPTILFYPAGNKSFDPITFDGDRTVKEIYKFLKANAAIPFKLPKKSKTESVEATPVTQDTSAADQPKDEL*

Protein Length: 238

Fln nts: TCATTCCATCATTTCAAGAAGCTGCAAAAGCATTTAAGGGAAAGATCCTTTTTGTGCATGTTGATTCTGACAATGCTGATGTTGGGAAACCAATTATGGAATACTTTGGCTTAAGTGGAGATGAACCAAAGGTAATTGCATGTGTTTTATCTGGAGAGCCCATCAAATATCTGTTTGAAGCTGAAATAAATGCGGATAACATCAAGGCTTTTGGAGAGGACTTCCTTGCGGACAAACTCAAGCCTTTCTTCAAGTCCGACCCTGTGCCGGAAAAGAATGATGGAGATGTAAAAATTGTTGTGGGAAAGAATTTTGATGAGATTGTACTGGATGAGTCCAAGGATGTCCTTCTCGAGATATATGCACCCTGGTGTGGGCATTGTCAAGCATTAGAACCTATATATAATAAACTTGCAAAGCAGCTTCGTGGGGTTGACTCCCTTGTCTTAGCTAAGATGGATGGTACAACTAACGAGCATGCTCGGGCCAAGTCTGATGGGTATCCCACAATTTTATTCTATCCAGCAGGAAACAAGAGTTTTGATCCTATTACTTTTGATGGCGATCGCACTGTTAAAGAAATATACAAATTCCTAAAGGCAAATGCAGCAATCCCATTCAAGTTGCCCAAGAAGAGCAAGACCGAAAGTGTAGAGGCTACTCCAGTTACCCAAGATACCAGTGCTGCTGACCAACCTAAAGATGAACTATGA___TGCTGAGTATTGATATTTATGTATTTGGAAGGAAATTTTCTTGAGTTTTCCGAAATTTTATCTTTACAAGAGCAATGTGCCAGTAATAAAGTTTTATAATTTATGAAAAGTTGAAAAACCCTTCAAGAGCAAACAAATACAGAATTACATACCAGATTCAGCTGTAGCTTGATGTATGGCAAGATAAATTTTATTTCTTCGAATCGCGTTTGACTACTAATCGCGTTTTCATACCAGATCTTGAAATTAATGACCCGGGTTCTATTAATAAACCATTAAACACCTTCATCACTGAGGTGAGATGCCAGTTATTTG

Fln Alignment:

Contig5002___IPSFQEAAKAFKGKILFVHVDSDNADVGKPIMEYFGLSGDEPKVIACVLSGEPIKYLFEAEINADNIKAFGEDFLADKLKPFFKSDPVPEKNDGDVKIVVGKNFDEIVLDESKDVLLEIYAPWCGHCQALEPIYNKLAKQLRGVDSLVLAKMDGTTNEHARAKSDGYPTILFYPAGNKSFDPITFDGDRTVKEIYKFLKANAAIPFKLPKKSKTESVEATPVTQDTSAADQPKDEL
A9NWK0_________________IPSFQEAAKLFKGKILFVYVESDNADVGKPIMEYFGLSGEEPKVIGCMLSEEPIKYLFEAEIIADNIKVFGEDFLADKLKPFFKSDPLPEKNDGDVKIVVGKNFDEIVLDESKDVLLELYAPWCGHCQALEPVYNKLAKQLRGVDSLVLAKMDGTSNEHARAKSDGFPTILFYPAGNKSFDPITFDDDRTVKGFYKFLKTNAAIPFKLPKKSKPESVEATPVTQDSSAAEQPKDEL

SNPs (tot: 4)

Position	A %	C %	T %	Probability
759		16	83	0.994512
836		57	42	1.0
900		20	80	0.995493
901	20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain