SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4999

Length: 1157 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene4999

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7948	15/15

Source	Descriptions	Term	Type	Identity
AutoFact	Anti-silencing protein, putative n=1 Tax=Ricinus communis RepID=B9SPY9_RICCO	-	-	89%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	histone chaperone	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	chromatin assembly or disassembly	GO:0006333	Biological Process	88%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	88%
Blast2go	nucleus	GO:0005634	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Sma3	Phosphatidylinositol 3-/4-kinase, catalytic domain	IPR000403	-	-
Sma3	Histone chaperone, ASF1-like	IPR006818	-	-
Sma3	Histone deposition protein Asf1	IPR017282	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NXA3

Fln msg: your sequence is longer than subject: 206 - 172

Fln protein: MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDEKYDQVLESVLVGPVNVGNYRFVFQADPPDPSKIPDEDIIGVTVLLLTCSYQGQEFIRVGYYVNNDYADEQLREEPPPTVQLDKIQRNILADKPRVTKFPIAFHSTLDEQSVLSQLGSLPPNAGILPSDASLLSVDNSLSASDMMDEVLLEGITT*

Protein Length: 207

Fln nts: ATGGGGAGGAGATTCATGGTCCCCATGTAATCCATGCGACTGGTATCATTTTAGTGTAAAAATCTCTTTGTATTTTCCCAATTTTGGGGCAAAGGGATAAACCCCGAGCTTCCTTCCCGCCTCTTCGTTTATTCTACCCCTTCGCAGTTTGCATATGTGGGTTTATAACAGCGTTTCAGCTTCTTGACAGTCAATGGGCATTTGCATTTGATTGCAAGGTATAAGGGTTTAGGGCATTTTGTGTTGGTGTATTGATCTAGGGAGGTTGCAAACTTGCCCAAGTCTTGAGGGTCTGCAATTTGTTTGGTGAGCTGAGCTGAGGTTGTTCAAGGGATTGGATAAAT_-_ATGAGCGCTGTCAATATTACAAATGTTACAGTGCTGGACAATCCTGCAGCGTTTCTGAATCCCTTCCAGTTTGAGATATCATATGAGTGCCTCACCCCTCTCAAAGATGATTTGGAATGGAAGTTGACATATGTGGGATCTGCAGAAGATGAGAAGTATGATCAAGTTCTAGAAAGTGTACTTGTTGGTCCTGTTAATGTTGGCAACTATCGCTTTGTCTTTCAGGCTGATCCTCCTGATCCATCCAAGATTCCTGATGAAGACATCATTGGGGTTACTGTGTTACTGCTGACTTGCTCGTACCAGGGGCAAGAATTCATTAGAGTTGGATATTATGTGAACAATGACTATGCTGATGAACAATTGCGAGAAGAACCTCCACCAACGGTGCAACTTGACAAGATTCAGAGGAACATTTTGGCTGACAAACCTCGGGTTACTAAGTTTCCAATTGCTTTTCATTCTACCCTAGATGAGCAATCTGTTCTTTCTCAGTTGGGGTCTCTACCTCCTAATGCTGGTATTCTCCCCTCTGATGCCAGTCTTTTAAGTGTTGATAATAGTCTTTCTGCTTCTGATATGATGGATGAAGTGCTATTAGAGGGAATTACGACTTGA___TTTTGCAGTATGTAACCTAACCTGAAGAATGGGAAAATACCAACATTACATTATTTCAACCCTTTACTCTGTATTTGTTCCTCCCTATAGATATCTCGTGGTTGAAGTTCCATCTATGTTATACTTATTATGACTGGGACATTTTGAAGGATGCTAATTTTCAGTTGTAAGTTGTAACCTTCCGATGCTTATTGC

Fln Alignment:

Contig4999___MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDEKYDQVLESVLVGPVNVGNYRFVFQADPPDPSKIPDEDIIGVTVLLLTCSYQGQEFIRVGYYVNNDYADEQLREEPPPTVQLDKIQRNILADKPRVTKFPIAFH
A9NXA3_________________MTAVNITNVTVLDNPAAFLNPFQFEISYECLVPLKDDLEWKLIYVGSAEDESYDQMLESVLVGPVNVGNYRFVFQADPPDPSKIRDEDIIGVTVLLLTCSYMGQEFIRVGYYVNNDYDDEQLREEPPPRVLIDRVQRNILADKPRVTKFPINFH

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
506	66		33		0.997452
684			83	16	0.994512
966	25			75	0.996473
969		75	25		0.996473
976		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain