SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4996

Length: 800 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene4996

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6898	22/22

Source	Descriptions	Term	Type	Identity
AutoFact	Galactomannan galactosyltransferase n=1 Tax=Senna occidentalis RepID=Q564G6_9FABA	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	62%
Blast2go	galactomannan galactosyltransferase	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Glycosyltransferases, Hexosyltransferases.	EC:2.4.1.-	-	0.0	73%

Source	KEGGs	Term	Identity
Blast2go	Fructose and mannose metabolism	00051	73%
Blast2go	N-Glycan biosynthesis	00510	73%
Blast2go	Mucin type O-Glycan biosynthesis	00512	73%
Blast2go	Various types of N-glycan biosynthesis	00513	73%
Blast2go	Other types of O-glycan biosynthesis	00514	73%
Blast2go	Biosynthesis of 12-, 14- and 16-membered macrolides	00522	73%
Blast2go	Glycosaminoglycan biosynthesis - keratan sulfate	00533	73%
Blast2go	Lipopolysaccharide biosynthesis	00540	73%
Blast2go	Peptidoglycan biosynthesis	00550	73%
Blast2go	Glycerolipid metabolism	00561	73%
Blast2go	Glycosylphosphatidylinositol(GPI)-anchor biosynthesis	00563	73%
Blast2go	Sphingolipid metabolism	00600	73%
Blast2go	Glycosphingolipid biosynthesis - lacto and neolacto series	00601	73%
Blast2go	Glycosphingolipid biosynthesis - globo series	00603	73%
Blast2go	Glycosphingolipid biosynthesis - ganglio series	00604	73%
Blast2go	Carotenoid biosynthesis	00906	73%
Blast2go	Zeatin biosynthesis	00908	73%
Blast2go	Flavonoid biosynthesis	00941	73%
Blast2go	Anthocyanin biosynthesis	00942	73%
Blast2go	Flavone and flavonol biosynthesis	00944	73%
Blast2go	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	73%
Blast2go	Betalain biosynthesis	00965	73%
Blast2go	Biosynthesis of type II polyketide products	01057	73%
Blast2go	Metabolic pathways	01100	73%
Blast2go	Biosynthesis of secondary metabolites	01110	73%

Source	GOs	Term	Type	Identity
Blast2go	transferase activity, transferring hexosyl groups	GO:0016758	Molecular Function	73%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	73%
Blast2go	integral to membrane	GO:0016021	Cellular Component	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	Galactosyl transferase	IPR008630	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
105	66	33			0.997452
122			66	33	0.997452
165	75	25			0.996473
278	80		20		0.995493
279	80		20		0.995493
320		20	80		0.995493
404	80			20	0.995493
431		20		80	0.995493
675		62		25	1.0
676		37		62	1.0
677	62			37	1.0
678	37	62			1.0
679		37		62	1.0
680	62			37	1.0
681	37			62	1.0
682	57			42	1.0
683	33			66	1.0
738		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain