SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4992

Length: 1045 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene4992 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22053	2/15
SustainPine v2.0	sp_v2.0_unigene60392	13/15

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PLAC8 family protein [Arabidopsis thaliana] sp\|Q9M9A5.1\|PCR6_ARATH RecName: Full=Protein PLANT CADMIUM RESISTANCE 6; Short=AtPCR6 gb\|AAF69715.1\|AC016041_20 F27J15.18 [Arabidopsis thaliana] gb\|AAR24706.1\| At1g49030 [Arabidopsis thaliana] gb\|AAS47652.1\| At1	-	-	4.0e-29	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Blast2go	protein	-	-	0.0	66%

Source	InterPros	Term	Type	Identity
Sma3	EGF-type aspartate/asparagine hydroxylation site	IPR000152	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Uncharacterised protein family Cys-rich	IPR006461	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-

Full-Lengther Next Prediction

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
328	33		66		0.997452
374	50	50			1.0
576	75		25		0.996473
814		10		90	0.90298
907		14		85	0.993533
912	20	80			0.995493
913		80	20		0.995493
914		80		20	0.995493
915		80		20	0.995493
917		20		80	0.995493

SSRs (tot: 3)

Start position	End position	Sequence	Length
637	648	CTG CTG CTG CTG	12
830	847	TGAAT TGAAT TGAAT TGA	18
846	866	GAGTC GAGTC GAGTC GAGTC G	21

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain