SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4982

Length: 998 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene4982 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene24552	16/17
SustainPine v2.0	sp_v2.0_unigene82663	1/17

Source	Descriptions	Term	Type	Identity
AutoFact	Histone H3 n=2 Tax=Pediculus humanus corporis RepID=E0V960_PEDHC	-	-	93%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	histone h3	-	-	98%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	98%
Blast2go	plastid	GO:0009536	Cellular Component	0.0	98%

Source	InterPros	Term	Type	Identity
Sma3	Histone-fold	IPR009072	-	-
Sma3	Histone core	IPR007125	-	-
Sma3	Histone H3	IPR000164	-	-

Full-Lengther Next Prediction

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
334		33		66	0.997452
377		25		75	0.996473
465			33	66	1.0
471	33		66		1.0
486		33		66	1.0
514		16		83	0.994512
530	20		80		0.995493
558	75	25			0.996473
620		11		88	0.923564
644		11		88	0.923564
646	87	12			0.992554
647	87	12			0.992554
650		87		12	0.992554
669	87		12		0.992554
698		14		85	0.993533
716			14	85	0.993533
731	85		14		0.993533
758		12		87	0.992554
764		75		25	1.0
779	83	16			0.994512
780		14	85		0.993533
781		14		85	0.993533
782	28	14	57		1.0
783	14	85			0.993533
784		85		14	0.993533
791	66		33		1.0
796			66	33	1.0
803		66		16	0.988813
809		33		66	1.0
815	28		71		1.0
818	83	16			0.994512
821		83		16	0.994512
827			85	14	0.993533
851			16	83	0.994512
893	83		16		0.994512
896	16		83		0.994512
905		83		16	0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
421	439	ACA ACA ACA ACA ACA ACA A	19

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain