SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4960

Length: 1136 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene4960 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21271	13/13

Source	Descriptions	Term	Type	Identity
AutoFact	Ras-related protein RIC1 n=7 Tax=commelinids RepID=RIC1_ORYSJ	-	-	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	rab family gtpase	-	-	89%

Source	InterPros	Term	Type	Identity
Sma3	Small GTPase superfamily, Rab type	IPR003579	-	-
Sma3		IPR013753	-	-
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	RNA polymerase sigma factor 54, interaction	IPR002078	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZ10

Fln msg:

Fln protein: MTTEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKMIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEINRYASENVNKLLVGNKCDLTTRRVVSYQAGKEFADSLGIPFLETSAKNATNVEEAFMTMASEIKKRMANQPTLNTGKSGTVNVGGSQPIPPKSGCCS*

Protein Length: 205

Fln nts: ATGGGGAAGTAAACTGAGATTTTTAACCTATTTTAAGAATTGCGAAAGGCCATTGTGCGCAGGGGAATTTACTACGACATTTTGCAGCTTTCCTGCTTCAAATTCACAATTCCCGGCCAAAATCTCGCTTTTGTAACTTCTCCAACTGTAGCAGAAACCCTTGCCGCTGCAAATCCGGTCGGCGGTTTTGTAAACGTAACTGTTTTGAC_-_ATGACTACCGAGTATGATTACTTGTTCAAGCTGTTGCTGATTGGCGATTCAGGAGTTGGAAAATCATGTCTTCTTCTCAGATTTGCGGATGATTCCTATTTGGAGAGCTACATCAGCACAATAGGAGTTGACTTTAAAATACGGACAGTGGAACAGGATGGGAAGATGATTAAGCTTCAGATTTGGGATACTGCTGGGCAAGAGCGGTTCAGGACAATTACTAGCAGTTACTATCGTGGTGCACATGGGATTATTGTTGTATACGATGTGACAGATCAAGAGAGCTTCAACAATGTTAAGCAGTGGCTAAATGAAATCAATCGTTATGCGAGTGAGAATGTTAATAAGTTGCTTGTAGGAAACAAATGTGATCTCACAACAAGAAGGGTGGTCAGCTACCAGGCTGGCAAGGAATTTGCAGATTCCTTAGGGATTCCTTTTCTCGAGACAAGTGCGAAGAATGCCACTAATGTTGAAGAAGCATTTATGACCATGGCATCAGAGATAAAAAAGAGGATGGCAAATCAGCCAACATTGAACACTGGCAAATCTGGCACAGTGAATGTTGGTGGGAGTCAGCCTATTCCACCGAAGAGCGGCTGCTGTTCATAG___TTTCGAGTCTTGGATCTCAGGAGCATTCTGGTCAAGTAATTCTACATAATGTATGCGGCGATGTTATGGTTGCATCAGGTAATTTGGGAGCTCTTTTGGAAAATAATGCAAGGATACATAAAGTGATGCTCGATGCCCAAGTTCAGTGCACTGGCTGATCTGGTCAAAGAGCAGTTTAGAAATGGGAATTATCAGAAGTTTTCAGAATTTTCAAGGGGATTTCCTTTTCACCGTAGTTGACATTTTCCGTCTTATCATCATTAAAACCAACAAATTGAACTTATAATGTGAACTAATAGCTTAAACATATAATAC

Fln Alignment:

Contig4960___MTTEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKMIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEINRYASENVNKLLVGNKCDLTTRRVVSYQAGKEFADSLGIPFLETSAKNATNVEEAFMTMASEIKKRMANQPTLNTGKSGTVNVGGSQPIPPKSGCCS
A9NZ10_________________MTTEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKMIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEINRYASENVNKLLVGNKCDLTTRRVVSYQTGKDFADSLGIPFLETSAKNATNVEEAFMTMASEIKKRMASQPALNTGKSGTVNVGGSQPIPPKTGCCS

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
476		40		60	1.0
575		25		75	0.996473
576	75	25			0.996473
579	75			25	0.996473
621		33		66	0.997452
623		33		33	0.997753
880	83	16			0.994512
881	83	16			0.994512
882	16	83			0.994512
1086		25	75		0.996473
1087		50	50		1.0
1091		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain