SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4955

Length: 1288 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene4955

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16045	22/22

Source	Descriptions	Term	Type	Identity
AutoFact	zinc finger protein LSD1 [Oryza sativa Japonica Group]	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	lsd1-like protein	-	-	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, LSD1-type	IPR005735	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NTQ6

Fln msg: Separated hits, possible frame ERROR between 695 and 754,

Fln protein: MLSGGYSTRSDTTTVNNGSANGPIGSAPPRINSIQNNNPGAVRPGWGTMPLHMNPYHPQSMPLPPHNGMQGQLVCSGCRTLLVYPQGAPNVCCAVCNTVTPVPPPGTEMAQLICGRCRTLLMYVRGATSVQCSCCNTVNLAMEANQVAHVSCGSCFTTLMYPYGAPSVKCAVCHYVTNVGQISNMRMPLPVxxxxxxxxxxxxxxxxxxxxxQTQTVVVENPMTVDERGKMVSNVAVGVTTEKL*

Protein Length: 246

Fln nts: ATGGGATTTTTAGAACGCGGAGTATGTTCAAAGCGGGTGGTGATTTAGCCGAGGGCGAAGAGGAGGACGAAGAAGGGCTTCGTAACAAACGTGGCGATTGATCCTAGCTTAGCCTGAAA_-_ATGCTGTCAGGAGGCTACTCAACCAGATCCGACACTACTACTGTCAACAACGGATCCGCTAATGGCCCAATAGGAAGTGCTCCCCCAAGAATTAACTCGATACAAAACAATAATCCAGGTGCTGTCAGGCCTGGCTGGGGAACCATGCCCCTTCACATGAATCCTTATCATCCCCAATCAATGCCTCTTCCGCCCCACAATGGTATGCAGGGTCAGCTTGTGTGCAGTGGATGTAGAACTCTTCTTGTTTATCCGCAAGGTGCACCAAATGTTTGCTGTGCAGTATGCAACACAGTCACTCCAGTTCCACCTCCTGGGACAGAAATGGCTCAGCTAATCTGTGGACGTTGTCGTACATTGCTAATGTACGTTCGTGGAGCAACTAGTGTTCAGTGCTCTTGTTGCAACACAGTTAATCTCGCAATGGAAGCAAATCAGGTTGCACATGTGAGTTGCGGGAGTTGTTTTACAACACTTATGTACCCATATGGAGCTCCATCTGTAAAATGTGCTGTCTGTCATTATGTTACGAATGTTGGACAAATAAGCAATATGAGAATGCCACTTCCTGTACAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxACAAACTCAAACTGTGGTTGTTGAGAATCCAATGACAGTGGATGAAAGGGGGAAAATGGTGAGTAATGTTGCGGTTGGAGTTACTACAGAGAAGTTATGA___CACAATAAAAATTTACTGCCAATACTTTTTTGTTCATGTACTTGGGATTGCTGCAGAATTCCTACGCATTCGTGGGAAGATGCCTCTTATTGCTGAACGATTTATATCATTTGATGCTCTATTCTGTTGTAGGCTTGAGCAAGATATCAGTAGGAAGACAGTAGTTTTGGCTCCTGTCTGGTTTTGTTGTCATTACTGTATGGATAACTGCTAGGGATACTTTGTTCAGCACTGGACATCTTGTGCATTATTAGTCTGTATCTTTTATCCATCCGTAAATGAGACTTTAAGGATGTTAGTAGGAAGACAACCCAGTATCAATCTTTGAGTGAGTAGATTAGATCAATACCGCACATTCTTTGAGTGAGCAGATTAGATTTCTAATATTATTTAAGATTGCTCATAATAGGAAATTTGCTTCATTGCAATGTTAAAC

Fln Alignment:

Contig4955___YSTRSDTTTVNNGSANGPIGSAPPRINSIQNNNPGAVRPGWGTMPLHMNPYHPQSMPLPPHNGMQGQLVCSGCRTLLVYPQGAPNVCCAVCNTVTPVPPPGTEMAQLICGRCRTLLMYVRGATSVQCSCCNTVNLAMEANQVAHVSCGSCFTTLMYPYGAPSVKCAVCHYVTNVGQISNMRMPLPVQxxxxxxxxxxxxxxxxxxxxQTQTVVVENPMTVDERGKMVSNVAVGVTTEKL
A9NTQ6_________________YSTRSDTTPVNNGSANGPIGSAPPRINSIQNNNPGAVRPGWGTMPLRMNPYPPQPMPLPPPN-VQGQLVCNGCRTLLVYPQGAPNVCCAVCNAVTAVPPPGTEMAQLICGHCRTLLMYVRGATSVQCSCCTTVNLAMEANQVAHVNCGNCFTTLVYPYGAPSVKCAVCHYVTSVGQISNMRMPLPAQxxxxxxxxxxxxxxxxxxxxQTQTVVVENPMTVDERGKMVSNVAVGVTTEKL

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
140	75		25		0.996473
151	75		25		0.996473
610			85	14	0.993533
613		85		14	0.993533
622		16		83	0.994512
895		20		80	0.995493
896	20			80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain